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AT1G15290 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G15290" - Tetratricopeptide repeat in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
protein homology
Your Input:
Gene Fusion
AT1G15290Tetratricopeptide repeat (TPR)-like superfamily protein; Its function is described as binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Tetratricopeptide-like helical (InterPro-IPR011990), Tetratricopeptide repeat-containing (InterPro-IPR013026), Tetratricopeptide repeat (InterPro-IPR019734); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT4G28080.1); Has 30201 Blast hits to 17322 [...] (1608 aa)    
Predicted Functional Partners:
CASC3/Barentsz eIF4AIII binding; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cytosol; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- CASC3/Barentsz eIF4AIII binding (InterPro-IPR018545); BEST Arabidopsis thaliana protein match is- CASC3/Barentsz eIF4AIII binding (TAIR-AT1G80000.2); Has 4051 Blast hits to 2285 proteins in 311 species- Archae - 2; Bacteria - 232; Metazoa - 1228; Fungi - 302; Plants - 228; Viruses - 67; Other Eukaryotes - 1992 (source- NCBI BLink) (585 aa)
Pentatricopeptide repeat-containing protein At1g30610, chloroplastic; Mutations in this locus result in embryo lethality. Embryo shape at seed maturity is globular (1006 aa)
Seed maturation protein; Unknown protein; Has 44 Blast hits to 44 proteins in 14 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (86 aa)
Ethylene-responsive transcription factor ERF022; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity) (184 aa)
Eukaryotic initiation factor 4A-III homolog; ATP-dependent RNA helicase. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs througho [...] (408 aa)
Tetratricopeptide repeat (TPR)-like superfamily protein; Negatively regulates meristematic tissue proliferation by integrating developmental signals with carbon source availability. May act as the scaffold of a protein complex, which sequesters key factors that are required for the G2 to M transition in meristematic tissues (1819 aa)
Esterase/lipase/thioesterase family protein; Its function is described as hydrolase activity, carboxylesterase activity; Involved in embryo development ending in seed dormancy; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Uncharacterised protein family UPF0017, hydrolase-like, conserved site (InterPro-IPR000952), AB-hydrolase YheT, putative (InterPro-IPR012020), Alpha/beta hydrolase fold-1 (InterPro-IPR000073); BEST Arabidopsis thaliana protein match is- alpha/beta-Hydrolases superfamily protein (TAIR-AT5G49950.1); Has 25 [...] (408 aa)
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be implicated in the folding, transport, and assembly of proteins. Probably involved in early steps of spliceosomal assembly (570 aa)
Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation (987 aa)
GRAS family transcription factor; Probable transcription factor involved in plant development (510 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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