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STRINGSTRING
AT1G15290 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G15290" - Tetratricopeptide repeat in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G15290Tetratricopeptide repeat (TPR)-like superfamily protein; Its function is described as binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Tetratricopeptide-like helical (InterPro-IPR011990), Tetratricopeptide repeat-containing (InterPro-IPR013026), Tetratricopeptide repeat (InterPro-IPR019734); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT4G28080.1); Has 30201 Blast hits to 17322 [...] (1608 aa)    
Predicted Functional Partners:
AT1G15280
CASC3/Barentsz eIF4AIII binding; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cytosol; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- CASC3/Barentsz eIF4AIII binding (InterPro-IPR018545); BEST Arabidopsis thaliana protein match is- CASC3/Barentsz eIF4AIII binding (TAIR-AT1G80000.2); Has 4051 Blast hits to 2285 proteins in 311 species- Archae - 2; Bacteria - 232; Metazoa - 1228; Fungi - 302; Plants - 228; Viruses - 67; Other Eukaryotes - 1992 (source- NCBI BLink) (585 aa)
           
  0.967
EMB2279
Pentatricopeptide repeat-containing protein At1g30610, chloroplastic; Mutations in this locus result in embryo lethality. Embryo shape at seed maturity is globular (1006 aa)
     
   
  0.964
AT3G12960
Seed maturation protein; Unknown protein; Has 44 Blast hits to 44 proteins in 14 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (86 aa)
           
  0.954
AT1G33760
Ethylene-responsive transcription factor ERF022; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity) (184 aa)
           
  0.838
EIF4A-III
Eukaryotic initiation factor 4A-III homolog; ATP-dependent RNA helicase. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs througho [...] (408 aa)
       
 
  0.818
AT4G28080
Tetratricopeptide repeat (TPR)-like superfamily protein; Negatively regulates meristematic tissue proliferation by integrating developmental signals with carbon source availability. May act as the scaffold of a protein complex, which sequesters key factors that are required for the G2 to M transition in meristematic tissues (1819 aa)
     
     
0.798
AT3G50790
Esterase/lipase/thioesterase family protein; Its function is described as hydrolase activity, carboxylesterase activity; Involved in embryo development ending in seed dormancy; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Uncharacterised protein family UPF0017, hydrolase-like, conserved site (InterPro-IPR000952), AB-hydrolase YheT, putative (InterPro-IPR012020), Alpha/beta hydrolase fold-1 (InterPro-IPR000073); BEST Arabidopsis thaliana protein match is- alpha/beta-Hydrolases superfamily protein (TAIR-AT5G49950.1); Has 25 [...] (408 aa)
     
   
  0.644
AT3G63400
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be implicated in the folding, transport, and assembly of proteins. Probably involved in early steps of spliceosomal assembly (570 aa)
           
  0.624
EIF3A
Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation (987 aa)
     
   
  0.613
AT3G13840
GRAS family transcription factor; Probable transcription factor involved in plant development (510 aa)
           
  0.588
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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