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AT1G15320 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G15320" - Seed dormancy control protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AT1G15320Seed dormancy control protein; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Expressed in flower; Expressed during petal differentiation and expansion stage; Has 62 Blast hits to 62 proteins in 17 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (307 aa)    
Predicted Functional Partners:
AT4G40020
Myosin heavy chain-related protein; BEST Arabidopsis thaliana protein match is- Plant protein of unknown function (DUF827) (TAIR-AT5G16730.1); Has 160438 Blast hits to 85353 proteins in 3205 species- Archae - 2021; Bacteria - 26641; Metazoa - 65466; Fungi - 13044; Plants - 8368; Viruses - 589; Other Eukaryotes - 44309 (source- NCBI BLink) (615 aa)
           
  0.967
AT2G28090
Heavy metal transport/detoxification superfamily protein; Heavy-metal-binding protein (245 aa)
           
  0.967
AT1G64625
Serine/threonine-protein kinase WNK (With No Lysine)-related; Transcription factor that may regulate root development (527 aa)
           
  0.967
AT1G26510
F-box associated ubiquitination effector family protein; Contains the following InterPro domains- F-box associated domain, type 3 (InterPro-IPR013187), F-box associated interaction domain (InterPro-IPR017451); BEST Arabidopsis thaliana protein match is- F-box and associated interaction domains-containing protein (TAIR-AT1G26515.1); Has 2064 Blast hits to 1145 proteins in 39 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2064; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (397 aa)
           
  0.967
AT2G21640
Encodes a protein of unknown function that is a marker for oxidative stress response (104 aa)
           
  0.861
AT3G19070
Homeodomain-like superfamily protein; Its function is described as sequence-specific DNA binding transcription factor activity; Involved in regulation of transcription; Contains the following InterPro domains- Homeodomain-like (InterPro-IPR009057), Homeodomain-related (InterPro-IPR012287), Myb-like DNA-binding domain, SHAQKYF class (InterPro-IPR006447); BEST Arabidopsis thaliana protein match is- myb-like HTH transcriptional regulator family protein (TAIR-AT5G06800.2); Has 18617 Blast hits to 9609 proteins in 654 species- Archae - 8; Bacteria - 972; Metazoa - 4790; Fungi - 3902; Plants [...] (346 aa)
           
  0.860
AT3G07250
Nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein; Its function is described as RNA binding, nucleotide binding, nucleic acid binding; Involved in transport, nucleocytoplasmic transport; Located in intracellular; Expressed in flower, leaf; Expressed during petal differentiation and expansion stage; Contains the following InterPro domains- Nuclear transport factor 2 (InterPro-IPR002075), Nuclear transport factor 2, Eukaryote (InterPro-IPR018222), RNA recognition motif, RNP-1 (InterPro-IPR000504), Nucleotide-binding, alpha-beta plait (Inter [...] (1294 aa)
           
  0.860
MS5
Tetratricopeptide repeat (TPR)-like superfamily protein; Ms5 mutants are male sterile, pollen tetrads undergo an extra round of division after meiosis II without chromosome replication, resulting in chromosome abnormalities. Gene product has some similarity to SCP1, a rat synaptonemal complex protein (450 aa)
           
  0.699
AT3G49830
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Its function is described as DNA helicase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; Involved in biological_process unknown; Located in chloroplast; Expressed in flower; Expressed during petal differentiation and expansion stage; Contains the following InterPro domains- TIP49, C-terminal (InterPro-IPR010339), ATPase, AAA+ type, core (InterPro-IPR003593); BEST Arabidopsis thaliana protein match is- P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR-AT [...] (473 aa)
           
  0.693
RCK
ATP binding;ATP-dependent helicases;DNA helicases; DNA helicase required for crossover formation, complete synapsis of homologous chromosomes and bivalent formation during meiosis. Is specific to recombination events resulting in interference-sensitive crossovers (class I meiotic crossover) (1133 aa)
           
  0.642
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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