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AT1G15480 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G15480" - Pentatricopeptide repeat-containing protein At1g15480, mitochondrial in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
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some 3D structure is known or predicted
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AT1G15480Pentatricopeptide repeat-containing protein At1g15480, mitochondrial; Tetratricopeptide repeat (TPR)-like superfamily protein; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- PENTATRICOPEPTIDE REPEAT 596 (TAIR-AT1G80270.3); Has 10417 Blast hits to 5237 proteins in 200 species- Archae - 3; Bacteria - 20; Metazoa - 156; Fungi - 81; Plants - 9958; Viruses - 0; Other Eukaryotes - 199 (source- NCBI BLink) (594 aa)    
Predicted Functional Partners:
PWP2
Periodic tryptophan protein 2; Involved in nucleolar processing of pre-18S ribosomal RNA. Plays a role early in ribosome biogenesis, especially in the maturation of 5.8S rRNA. Required for guard cell functions (900 aa)
     
        0.831
TIM13
Mitochondrial import inner membrane translocase subunit TIM13; Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIM8-TIM13 complex mediates the import of some protein [...] (87 aa)
     
        0.758
AT1G20220
Alba DNA/RNA-binding protein; Its function is described as nucleic acid binding; Involved in biological_process unknown; Located in plant-type cell wall; Expressed in 25 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Alba, DNA/RNA-binding protein (InterPro-IPR002775); BEST Arabidopsis thaliana protein match is- Alba DNA/RNA-binding protein (TAIR-AT1G76010.1); Has 46942 Blast hits to 19054 proteins in 1334 species- Archae - 23; Bacteria - 15382; Metazoa - 15943; Fungi - 3395; Plants - 5072; Viruses - 633; Other Eukaryotes - 6494 (source- NC [...] (315 aa)
     
   
  0.757
TIM10
Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus (107 aa)
     
        0.751
AT5G54910
DEA(D/H)-box RNA helicase family protein; Its function is described as helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; Involved in biological_process unknown; Located in nucleolus; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA helicase, DEAD-box type, Q motif (InterPro-IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro-IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro-IPR000629), DEAD-like helicase, N-terminal (InterPro-IPR014001), DNA [...] (739 aa)
     
 
  0.735
AT4G40000
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Its function is described as methyltransferase activity, RNA binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 17 plant structures; Expressed during 8 growth stages; Contains the following InterPro domains- Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro-IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro-IPR018314); BEST Arabidopsis thaliana protein match is- S-adenosyl-L-methionine-dependent methyltransferases [...] (783 aa)
     
   
  0.733
AT3G02490
Pentatricopeptide repeat-containing protein At3g02490, mitochondrial; Pentatricopeptide repeat (PPR) superfamily protein; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Pentatricopeptide repeat (PPR) superfamily protein (TAIR-AT5G15980.1); Has 7105 Blast hits to 3955 proteins in 104 species- Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 7071; Viruses - 0; Other Eukaryotes - 27 (source- NCBI BLink) (665 aa)
     
   
  0.726
AT2G22100
RNA-binding (RRM/RBD/RNP motifs) family protein; Acts as component of a complex regulating the turnover of mRNAs in the nucleus. Binds with high affinity to RNA molecules that contain U-rich sequences in 3’-UTRs. May function in complex with UBP1 and contribute to the stabilization of mRNAs in the nucleus (By similarity) (382 aa)
     
 
  0.720
AT4G13070
RNA-binding CRS1 / YhbY (CRM) domain protein; Its function is described as RNA binding; Involved in biological_process unknown; Expressed in 12 plant structures; Expressed during 6 growth stages; Contains the following InterPro domains- RNA-binding, CRM domain (InterPro-IPR001890); BEST Arabidopsis thaliana protein match is- RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR-AT2G28480.1); Has 317 Blast hits to 276 proteins in 27 species- Archae - 2; Bacteria - 4; Metazoa - 5; Fungi - 0; Plants - 270; Viruses - 0; Other Eukaryotes - 36 (source- NCBI BLink) (343 aa)
           
  0.699
AT3G52905
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Its function is described as hydrolase activity, acting on ester bonds, nucleic acid binding; Involved in DNA repair, response to DNA damage stimulus, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, DNA recombination; Located in cytoplasm; Contains the following InterPro domains- Resolvase, RNase H-like fold (InterPro-IPR006641), Polynucleotidyl transferase, ribonuclease H fold (InterPro-IPR012337), Resolvase, holliday junction-type, YqgF-like (InterPro-IPR005227); Has 4393 Blast hits to 4393 p [...] (170 aa)
           
  0.699
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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