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AT1G15480 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G15480" - Pentatricopeptide repeat-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G15480Pentatricopeptide repeat-containing protein (594 aa)    
Predicted Functional Partners:
AT3G13150
Pentatricopeptide repeat-containing protein (551 aa)
     
   
  0.571
NAF1
Nuclear assembly factor 1 (801 aa)
     
   
  0.571
AT4G40000
S-adenosyl-L-methionine-dependent methyltransferase-like protein (783 aa)
     
   
  0.560
AT1G62010
Mitochondrial transcription termination factor family protein (415 aa)
     
 
  0.539
AT1G20220
Alba DNA/RNA-binding protein (315 aa)
     
   
  0.530
AT3G02490
Pentatricopeptide repeat-containing protein (665 aa)
     
   
  0.529
AT1G06560
NOL1/NOP2/sun-like protein (599 aa)
     
   
  0.529
AT2G22100
RNA-binding (RRM/RBD/RNP motifs) family protein; Acts as component of a complex regulating the turnover of mRNAs in the nucleus. Binds with high affinity to RNA molecules that contain U-rich sequences in 3’-UTRs. May function in complex with UBP1 and contribute to the stabilization of mRNAs in the nucleus (By similarity) (382 aa)
     
 
  0.518
AT5G64950
Mitochondrial transcription termination factor family protein (391 aa)
       
 
  0.514
AT3G18870
Mitochondrial transcription termination factor family protein (274 aa)
       
 
  0.514
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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