• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G15740 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G15740" - Leucine-rich repeat family protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G15740Leucine-rich repeat family protein; BEST Arabidopsis thaliana protein match is- Leucine-rich repeat (LRR) family protein (TAIR-AT4G23840.1); Has 38052 Blast hits to 19856 proteins in 856 species- Archae - 6; Bacteria - 8624; Metazoa - 11681; Fungi - 680; Plants - 12072; Viruses - 79; Other Eukaryotes - 4910 (source- NCBI BLink) (585 aa)    
Predicted Functional Partners:
AT4G19860
Lecithin-cholesterol acyltransferase-like 4; alpha/beta-Hydrolases superfamily protein; Its function is described as phosphatidylcholine-sterol O-acyltransferase activity; Involved in lipid metabolic process; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Lecithin-cholesterol acyltransferase (InterPro-IPR003386); BEST Arabidopsis thaliana protein match is- lecithin-cholesterol acyltransferase 3 (TAIR-AT3G03310.1); Has 596 Blast hits to 589 proteins in 168 species- Archae - 2; Bacteria [...] (535 aa)
     
        0.828
ACBP3
acyl-CoA-binding protein ACBP3. Localized extracellularly in transiently expressed tobacco BY-2 cells and onion epidermal cells. Binds arachidonyl-CoA with high affinity; Belongs to the ACBP family (366 aa)
     
        0.789
AT1G19660
Wound-responsive family protein; Bifunctional nuclease with both RNase and DNase activities. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen (By similarity) (329 aa)
     
        0.787
AT5G63190
MA3 domain-containing protein; Contains the following InterPro domains- Initiation factor eIF-4 gamma, MA3 (InterPro-IPR003891); BEST Arabidopsis thaliana protein match is- MA3 domain-containing protein (TAIR-AT3G48390.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (702 aa)
     
        0.746
ATG8F
Ubiquitin-like superfamily protein; Ubiquitin-like modifier involved in autophagosomes formation. May mediate the delivery of the autophagosomes to the vacuole via the microtubule cytoskeleton (121 aa)
     
        0.711
HGO
Homogentisate 1,2-dioxygenase (461 aa)
     
        0.701
UBC5
Ubiquitin-conjugating enzyme E2 5; Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins (185 aa)
     
        0.586
AT1G01240
Uncharacterized protein At1g01240; Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G46550.1); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (331 aa)
     
        0.580
AT2G04690
Pyridoxamine 5’-phosphate oxidase family protein; Its function is described as FMN binding; Involved in biological_process unknown; Located in vacuole; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Cellular repressor of E1A-stimulated genes (CREG) (InterPro-IPR014631), FMN-binding split barrel (InterPro-IPR012349), FMN-binding split barrel, related (InterPro-IPR009002); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukar [...] (210 aa)
     
        0.580
AT4G18930
RNA ligase/cyclic nucleotide phosphodiesterase family protein; Hydrolyzes ADP-ribose 1",2"-cyclic phosphate (Appr>1) that is produced during tRNA splicing into ADP-ribose 1"-phosphate (Appr-1"p). Acts also on nucleoside 2’,3’-cyclic phosphates (181 aa)
           
  0.579
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (8%) [HD]