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AT1G15810 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G15810" - S15/NS1, RNA-binding protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G15810S15/NS1, RNA-binding protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in small ribosomal subunit, ribosome, intracellular; Expressed in 24 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Ribosomal protein S15 (InterPro-IPR000589), Ribosomal protein S15, bacterial-type (InterPro-IPR005290), S15/NS1, RNA-binding (InterPro-IPR009068); BEST Arabidopsis thaliana protein match is- S15/NS1, RNA-binding protein (TAIR-AT1G80620.1); Has 8219 Blast hits to 8219 proteins in 2793 species- Archae [...] (419 aa)    
Predicted Functional Partners:
AT2G20060
Ribosomal protein L4/L1 family; Its function is described as structural constituent of ribosome, rRNA binding; Involved in translation; Located in ribosome, intracellular, chloroplast, large ribosomal subunit; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L4 (InterPro-IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro-IPR013005), Ribosomal protein L4/L1e (InterPro-IPR002136); BEST Arabidopsis thaliana protein match is- ribosomal protein L4 (TAIR-AT1G07320.4); Has 8236 Blast hits to 8236 protei [...] (300 aa)
     
 
  0.992
RPL4
50S ribosomal protein L4, chloroplastic; This protein binds directly and specifically to 23S rRNA (By similarity). May play a role in plastid transcriptional regulation; Belongs to the universal ribosomal protein uL4 family (282 aa)
     
 
  0.991
AT1G07830
Ribosomal protein L29 family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in mitochondrion, ribosome, mitochondrial ribosome, intracellular; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L47, mitochondrial (InterPro-IPR010729), Ribosomal protein L29 (InterPro-IPR001854); Has 365 Blast hits to 365 proteins in 201 species- Archae - 0; Bacteria - 2; Metazoa - 115; Fungi - 146; Plants - 47; Viruses - 0; Other Eukaryotes - 55 (source- NCBI BLink) (144 aa)
     
 
  0.990
RPL3P
50S ribosomal protein L3-2, chloroplastic; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (324 aa)
     
 
  0.989
AT2G43030
50S ribosomal protein L3-1, chloroplastic; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (271 aa)
     
 
  0.989
AT1G64880
Ribosomal protein S5 family protein; Its function is described as structural constituent of ribosome, RNA binding; Involved in translation; Located in ribosome, Golgi apparatus, intracellular; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Double-stranded RNA-binding-like (InterPro-IPR014720), Ribosomal protein S5, C-terminal (InterPro-IPR005324), Ribosomal protein S5 domain 2-type fold (InterPro-IPR020568), Ribosomal protein S5 (InterPro-IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro-IPR014721), Ri [...] (515 aa)
     
 
  0.988
AT1G16870
Mitochondrial 28S ribosomal protein S29-related; Contains the following InterPro domains- Ribosomal protein S23/S29, mitochondrial (InterPro-IPR019368); Has 239 Blast hits to 239 proteins in 116 species- Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 38; Plants - 38; Viruses - 0; Other Eukaryotes - 57 (source- NCBI BLink) (480 aa)
     
      0.985
RPL27
50S ribosomal protein L27, chloroplastic; Ribosomal protein large subunit 27 (RPL27); Its function is described as structural constituent of ribosome; Involved in translation; Located in thylakoid, ribosome, chloroplast stroma, chloroplast; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L27 (InterPro-IPR001684), Ribosomal protein L27, conserved site (InterPro-IPR018261); BEST Arabidopsis thaliana protein match is- Ribosomal protein L27 family protein (TAIR-AT2G16930.3); Has 1807 Blast hits to 1807 proteins [...] (198 aa)
   
 
  0.985
AT5G15220
Ribosomal protein L27 family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in ribosome, intracellular; Contains the following InterPro domains- Ribosomal protein L27 (InterPro-IPR001684), Ribosomal protein L27, conserved site (InterPro-IPR018261); BEST Arabidopsis thaliana protein match is- Ribosomal protein L27 family protein (TAIR-AT2G16930.3); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (154 aa)
   
 
  0.985
AT2G16930
Ribosomal protein L27 family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in ribosome, intracellular; Contains the following InterPro domains- Ribosomal protein L27 (InterPro-IPR001684), Ribosomal protein L27, conserved site (InterPro-IPR018261); BEST Arabidopsis thaliana protein match is- Ribosomal protein L27 family protein (TAIR-AT5G15220.1); Has 7688 Blast hits to 7688 proteins in 2721 species- Archae - 0; Bacteria - 5395; Metazoa - 115; Fungi - 142; Plants - 116; Viruses - 0; Other Eukaryotes - 1920 (source- NCBI BLink) (154 aa)
   
 
  0.985
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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