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STRINGSTRING
AT1G15825 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G15825" - Hydroxyproline-rich glycoprotein family protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G15825Hydroxyproline-rich glycoprotein family protein; Has 11879 Blast hits to 5508 proteins in 628 species- Archae - 56; Bacteria - 1752; Metazoa - 3397; Fungi - 734; Plants - 3913; Viruses - 567; Other Eukaryotes - 1460 (source- NCBI BLink) (126 aa)    
Predicted Functional Partners:
AT3G19020
Pollen-specific leucine-rich repeat extensin-like protein 1; Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization (956 aa)
           
  0.953
AT1G15830
Unknown protein; Has 165982 Blast hits to 57214 proteins in 2459 species- Archae - 263; Bacteria - 44622; Metazoa - 55751; Fungi - 10656; Plants - 17613; Viruses - 2527; Other Eukaryotes - 34550 (source- NCBI BLink) (483 aa)
     
   
  0.902
AT2G15770
Uncharacterized protein At2g15770; Cupredoxin superfamily protein; Its function is described as electron carrier activity, copper ion binding; Located in endomembrane system; Contains the following InterPro domains- Plastocyanin-like (InterPro-IPR003245), Cupredoxin (InterPro-IPR008972); BEST Arabidopsis thaliana protein match is- Cupredoxin superfamily protein (TAIR-AT2G15780.1); Has 18677 Blast hits to 5926 proteins in 719 species- Archae - 60; Bacteria - 4775; Metazoa - 5085; Fungi - 1787; Plants - 1658; Viruses - 83; Other Eukaryotes - 5229 (source- NCBI BLink) (301 aa)
           
  0.892
AT4G35610
Zinc finger (C2H2 type) family protein; Its function is described as sequence-specific DNA binding transcription factor activity; Involved in regulation of transcription; Located in nucleus; Contains the following InterPro domains- Zinc finger, C2H2-like (InterPro-IPR015880), Zinc finger, C2H2-type (InterPro-IPR007087); BEST Arabidopsis thaliana protein match is- zinc finger (C2H2 type) family protein (TAIR-AT4G35700.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- N [...] (271 aa)
           
  0.838
AT4G05553
Zinc knuckle (CCHC-type) family protein; Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (111 aa)
           
  0.838
AT2G43865
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (101 aa)
           
  0.838
AT1G54215
Proline-rich family protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Has 103183 Blast hits to 42587 proteins in 2006 species- Archae - 171; Bacteria - 19191; Metazoa - 36983; Fungi - 10058; Plants - 17697; Viruses - 3627; Other Eukaryotes - 15456 (source- NCBI BLink) (169 aa)
           
  0.838
AT1G07970
Cytochrome B561, amino-terminal protein; Contains the following InterPro domains- Cytochrome B561-related, N-terminal (InterPro-IPR019176); Has 215 Blast hits to 213 proteins in 79 species- Archae - 0; Bacteria - 6; Metazoa - 131; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 14 (source- NCBI BLink) (693 aa)
           
  0.838
chr31
SNF2 domain-containing protein CLASSY 3; Probable chromatin remodeling factor (1410 aa)
           
  0.768
TIN1
Uncharacterized protein At5g64510; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Expressed in 17 plant structures; Expressed during 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (424 aa)
           
  0.765
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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