STRINGSTRING
AT1G15970 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G15970" - DNA glycosylase-like protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G15970DNA glycosylase-like protein (352 aa)    
Predicted Functional Partners:
RECQSIM
DNA helicase; Plant specific 3’-5’ DNA helicase that may play a role in the repair of DNA (858 aa)
   
   
  0.731
AT1G75230
DNA-3-methyladenine glycosylase II (394 aa)
         
  0.718
AT1G19480
DNA glycosylase superfamily protein (382 aa)
         
  0.718
RECQI1
RECQ helicase l1; 3’-5’ DNA helicase that may play a role in the repair of DNA (606 aa)
   
   
  0.707
AT1G49250
ATP-dependent DNA ligase (657 aa)
           
  0.705
AT3G50880
DNA-3-methyladenine glycosylase II (273 aa)
         
  0.685
AT1G67580
Protein kinase-like protein (752 aa)
           
  0.676
AT5G16090
Uncharacterized protein (171 aa)
           
  0.670
RAD23D
RADIATION SENSITIVE23D; May be involved in nucleotide excision repair (By similarity). Binds and presumably selects ubiquitin-conjugates for destruction. Prefers multiubiquitin chains rather than single ubiquitins, with a binding affinity for ’Lys-48’-linked ubiquitin chains. Acts as a ubiquitin receptor that associates with the 26S proteasomal docking subunit RPN10 for the indirect recognition of ubiquitinated substrates of ubiquitin/26S proteasome-mediated proteolysis (UPP) (By similarity) (378 aa)
     
   
  0.649
POLD3
DNA-directed DNA polymerase (509 aa)
     
   
  0.621
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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