STRINGSTRING
AT1G16000 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G16000" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G16000Uncharacterized protein (86 aa)    
Predicted Functional Partners:
AT5G19540
Uncharacterized protein (462 aa)
           
  0.975
AT1G77750
Ribosomal protein S13/S18 family; Located at the top of the head of the small subunit, it contacts several helices of the 18S rRNA (154 aa)
     
        0.718
AKR2
Ankyrin repeat-containing protein 2; Exhibits chaperone activity toward chloroplast outer envelope membrane, mitochondrion outer membrane, endoplasmic reticulum membrane and peroxisomal proteins, by recruiting specific proteins containing a single transmembrane associated with an AKR2A-binding sequence (ABS) and subsequently binding glycolipids (e.g. monogalactosyldiacylglycerol (MGDG) and phosphatidylglycerol (PG)) present in the membrane of the target organelle (PubMed-18193034, PubMed-20215589, PubMed-25203210). Seems to be involved in the regulation of hydrogen peroxide levels duri [...] (350 aa)
       
 
  0.707
TIM10
Mitochondrial import inner membrane translocase subunit Tim10 (107 aa)
     
        0.678
TOM6
Translocase of the outer mitochondrial membrane 6; A component of the complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins (54 aa)
     
        0.641
AT1G33590
Leucine-rich repeat-containing protein (477 aa)
           
  0.634
TIM13
Translocase of the inner mitochondrial membrane 13; Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIM8-TIM13 complex mediates the import of some proteins while the [...] (87 aa)
     
        0.593
FIS1B
FISSION 1B; Component of the peroxisomal and mitochondrial division machineries. Plays a role in promoting the fission of mitochondria and peroxisomes. In association with PEX11C, PEX11D, PEX11E and DRP3A, is involved in cell cycle-associated constitutive self- replication of preexisting peroxisomes (167 aa)
           
  0.559
AT2G39390
60S ribosomal protein L35-2 (123 aa)
     
        0.555
RSZ21
RS-containing zinc finger protein 21; Probably involved in intron recognition and spliceosome assembly (187 aa)
           
  0.553
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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