STRINGSTRING
AT1G16080 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G16080" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G16080Uncharacterized protein (313 aa)    
Predicted Functional Partners:
AT4G15790
Uncharacterized protein (147 aa)
     
   
  0.872
AT2G24420
DNA repair ATPase-related (440 aa)
           
  0.861
AT2G42690
alpha/beta-Hydrolases superfamily protein; Acylhydrolase that catalyzes the hydrolysis of phosphatidylcholine (PC) at the sn-1 position. High activity toward PC, medium activity toward monogalactosyldiacylglycerol (MGDG) and low activity toward triacylglycerol (TAG). Confers sensitivity to UV-B radiation probably by deesterifying membrane phospholipids (412 aa)
     
   
  0.728
AT1G71500
Rieske (2Fe-2S) domain-containing protein (287 aa)
     
        0.692
AT4G33400
Vacuolar import/degradation, Vid27-related protein (645 aa)
           
  0.670
AT4G02340
Putative epoxide hydrolase (324 aa)
           
  0.670
AT3G48420
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (319 aa)
     
        0.665
CP5
Membrane related protein CP5 (385 aa)
           
  0.649
AT2G27680
NAD(P)-linked oxidoreductase-like protein (384 aa)
     
        0.644
AT1G72290
Kunitz family trypsin and protease inhibitor protein (215 aa)
           
  0.633
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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