STRINGSTRING
AT1G16290 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G16290" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G16290Uncharacterized protein (419 aa)    
Predicted Functional Partners:
AT4G26630
DEK domain-containing chromatin associated protein (763 aa)
       
      0.527
AT5G57200
ENTH/ANTH/VHS superfamily protein (591 aa)
     
        0.440
ABCA12
Member of ATH subfamily (888 aa)
     
        0.438
ABCA11
Member of ATH subfamily (919 aa)
     
        0.438
ABCG28
ATP-binding cassette G28 (1109 aa)
     
        0.438
AT5G60070
Ankyrin repeat family protein (548 aa)
     
        0.438
ACT4
Actin 4; Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. This is considered as one of the reproductive actins (377 aa)
     
        0.438
CHX24
cation/H+ exchanger 24; May operate as a cation/H(+) antiporter (859 aa)
     
        0.438
AT5G21080
Uncharacterized protein (1025 aa)
     
        0.438
PIN8
PIN-FORMED 8; May act as a component of the auxin efflux carrier (367 aa)
     
        0.438
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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