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UP6 protein (Arabidopsis thaliana) - STRING interaction network
"UP6" - Unknown protein 6 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UP6Unknown protein 6 (202 aa)    
Predicted Functional Partners:
AT2G31670
Stress responsive alpha-beta barrel domain protein; Involved in stress response (263 aa)
           
  0.671
MAP65-9
Microtubule-associated protein 65-9 (549 aa)
           
  0.637
MAP65-7
Microtubule-associated protein 65-7 (603 aa)
           
  0.637
HIT3
HIS triad family protein 3 (147 aa)
           
  0.603
FHIT
FRAGILE HISTIDINE TRIAD (180 aa)
           
  0.593
SIGE
Sigma factor E; Essential protein. Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites (e.g. psbA and psbD) and are then released. Essential for blue light-mediated transcription of psbD, which encodes the photosystem II reaction center protein D2. Plays a role in reproduction (517 aa)
     
        0.489
PEX11B
Peroxin 11B; Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission (227 aa)
     
   
  0.484
AT2G15020
Uncharacterized protein (526 aa)
     
        0.481
AT3G56290
Uncharacterized protein (173 aa)
     
        0.478
ACX6
acyl-CoA oxidase; Catalyzes the desaturation of acyl-CoAs to 2-trans- enoyl-CoAs (675 aa)
           
  0.474
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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