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AT1G16800 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G16800" - Hydrolase domain-containing protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G16800Hydrolase domain-containing protein (2127 aa)    
Predicted Functional Partners:
PUM5
Pumilio 5; Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3’-UTR of target mRNAs. Binds the APUM-binding elements (APBEs) in the 3’-UTR mRNA sequence of CLV1, PNH, WUS and FAS2 (961 aa)
     
 
  0.912
AT3G26560
ATP-dependent RNA helicase, putative; May be involved in pre-mRNA splicing (1168 aa)
     
 
  0.887
AT4G28990
RNA-binding protein-related (395 aa)
     
   
  0.879
At3g45590
Splicing endonuclease 1; Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5’- and 3’-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2’,3’-cyclic phosphate and 5’-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the [...] (237 aa)
           
  0.863
AT2G39260
RNA binding protein; Recruited by UPF3 associated with the EJC core at the cytoplasmic side of the nuclear envelope and the subsequent formation of an UPF1-UPF2-UPF3 surveillance complex (including UPF1 bound to release factors at the stalled ribosome) is believed to activate NMD. In cooperation with UPF3 stimulates both ATPase and RNA helicase activities of UPF1. Binds spliced mRNA (By similarity). Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons by associating with the nuclear exon junction complex (EJC). Required for plant development and adaptatio [...] (1181 aa)
     
 
  0.753
AT3G42660
Chromosome transmission fidelity protein 4 (953 aa)
     
 
  0.749
emb1067
Embryo defective 1067 (289 aa)
     
   
  0.738
NIH
Nuclear DEIH-boxhelicase; May function as an ATP-dependent RNA/DNA helicase. Binds DNA in vitro in a non-specific manner (1576 aa)
     
 
  0.722
PAB2
poly(A) binding protein 2; Binds the poly(A) tail of mRNA. Appears to be an important mediator of the multiple roles of the poly(A) tail in mRNA biogenesis, stability and translation. In the cytoplasm, affects both translation and mRNA decay. Stimulates translation by interaction with translation initiation factor eIF4G, a subunit of the cap-binding complex eIF4F, bringing the 5’- and 3’-ends of the mRNA in proximity. The formation of this circular mRNP structure appears to be critical for the synergistic effects of the cap and the poly(A) tail in facilitating translation initiation, r [...] (629 aa)
     
 
  0.711
GTA2
Global transcription factor group A2; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (By similarity) (1041 aa)
     
 
  0.708
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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