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AT1G16870 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G16870" - Mitochondrial 28S ribosomal protein S29-related in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G16870Mitochondrial 28S ribosomal protein S29-related (480 aa)    
Predicted Functional Partners:
AT1G64880
Ribosomal protein S5 family protein (515 aa)
     
      0.990
AT3G49080
Small subunit ribosomal protein S9 (430 aa)
     
      0.984
AT1G07210
Ribosomal protein S18 (261 aa)
     
 
  0.979
AT1G15810
S15/NS1, RNA-binding protein (419 aa)
     
 
  0.978
AT1G80620
S15/NS1, RNA-binding protein (414 aa)
     
 
  0.974
AT5G56940
Ribosomal protein S16 family protein (135 aa)
     
 
  0.974
RPS9
Ribosomal protein S9; Binds directly to 16S ribosomal RNA (208 aa)
     
      0.973
PUR4
Purine biosynthesis 4; Essential to the male gametophyte development. Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate (1407 aa)
     
      0.972
rps2
Ribosomal protein S2 (236 aa)
     
 
  0.972
At3g03600
Ribosomal protein S2 (219 aa)
     
 
  0.972
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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