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AT1G16960 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G16960" - Ubiquitin domain-containing protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G16960Ubiquitin domain-containing protein; Its function is described as molecular_function unknown; Involved in N-terminal protein myristoylation; Located in cellular_component unknown; BEST Arabidopsis thaliana protein match is- Ubiquitin domain-containing protein (TAIR-AT1G53400.1); Has 325 Blast hits to 324 proteins in 115 species- Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 67; Plants - 89; Viruses - 0; Other Eukaryotes - 24 (source- NCBI BLink) (114 aa)    
Predicted Functional Partners:
DSK2
Ubiquitin domain-containing protein DSK2b; Binds and presumably selects ubiquitin-conjugates for destruction. Prefers multiubiquitin chains rather than single ubiquitins, with a binding affinity for ’Lys-48’-linked ubiquitin chains. Acts as a ubiquitin receptor that associates with the 26S proteasomal docking subunit RPN10 for the indirect recognition of ubiquitinated substrates of ubiquitin/26S proteasome-mediated proteolysis (UPP) (551 aa)
       
 
  0.629
ORF291
Encodes a cytochrome c oxidase subunit II (291 aa)
           
  0.626
AT5G62610
Basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Its function is described as DNA binding, sequence-specific DNA binding transcription factor activity; Involved in regulation of transcription; Located in nucleus, chloroplast; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Helix-loop-helix DNA-binding domain (InterPro-IPR001092), Helix-loop-helix DNA-binding (InterPro-IPR011598); BEST Arabidopsis thaliana protein match is- BIG PETAL P (TAIR-AT1G59640.1); Has 2341 Blast hits to 2333 proteins in 124 species- Arch [...] (281 aa)
           
  0.592
AT2G42300
Basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Its function is described as DNA binding, sequence-specific DNA binding transcription factor activity; Involved in regulation of transcription; Located in nucleus; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Helix-loop-helix DNA-binding domain (InterPro-IPR001092), Helix-loop-helix DNA-binding (InterPro-IPR011598); BEST Arabidopsis thaliana protein match is- basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR-AT3G57800.2); Has 2090 Blast hits [...] (327 aa)
           
  0.568
RTH
Encodes a protein of 231 amino acids with 51% identity to RTE1 over 209 amino acids (231 aa)
           
  0.558
RTE1
Protein REVERSION-TO-ETHYLENE SENSITIVITY1; Encodes a predicted membrane protein. Similar sequences are widely distributed and conserved in plants, animals and protists but absent in fungi and prokaryotes. The sequence has no known motifs and no biological function has been assigned in any species. In Arabidopsis, it appears to be involved in the negative regulation of the response to ethylene, is localized to the Golgi and is a positive regulator of ETR1 (250 aa)
           
  0.558
ORF240A
Uncharacterized ribosomal S3-like protein AtMg00690, mitochondrial; Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-ATMG00670.1); Belongs to the universal ribosomal protein uS3 family (240 aa)
           
  0.545
AT1G03365
Putative E3 ubiquitin-protein ligase RF4; RING/U-box superfamily protein; Its function is described as zinc ion binding; Contains the following InterPro domains- Zinc finger, RING-type (InterPro-IPR001841); BEST Arabidopsis thaliana protein match is- RING/U-box superfamily protein (TAIR-AT4G03000.2) (823 aa)
           
  0.528
AT1G50670
OTU-like cysteine protease family protein; Its function is described as cysteine-type peptidase activity; Involved in biological_process unknown; Expressed in 23 plant structures; Expressed during 16 growth stages; Contains the following InterPro domains- Ovarian tumour, otubain (InterPro-IPR003323); Has 406 Blast hits to 406 proteins in 179 species- Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 136; Plants - 63; Viruses - 0; Other Eukaryotes - 48 (source- NCBI BLink) (208 aa)
           
  0.517
EMB3123
Protein THYLAKOID ASSEMBLY 8, chloroplastic; Essential protein required during embryogenesis. Mediates group II organellar RNA introns splicing (e.g. ycf3-2 and trnA). Binds weakly to specific RNA. Promotes the biogenesis of chloroplast thylakoid membranes (222 aa)
     
   
  0.473
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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