STRINGSTRING
AT1G16960 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G16960" - Ubiquitin domain-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G16960Ubiquitin domain-containing protein (114 aa)    
Predicted Functional Partners:
AT1G17430
alpha/beta-Hydrolases superfamily protein (332 aa)
           
  0.732
AT1G17285
Uncharacterized protein (95 aa)
           
  0.732
AT1G17270
peptide-O-fucosyltransferase (564 aa)
           
  0.732
RTFL11
ROTUNDIFOLIA like 11 (119 aa)
           
  0.732
AT1G17230
Leucine-rich receptor-like protein kinase (1101 aa)
           
  0.732
AT1G17150
Pectin lyase-like protein (402 aa)
           
  0.732
AT1G17145
RING/U-box superfamily protein (335 aa)
           
  0.732
AT1G17030
Uncharacterized protein (502 aa)
           
  0.732
AT1G17010
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein (361 aa)
           
  0.732
AT1G16950
Uncharacterized protein (93 aa)
           
  0.732
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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