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AT1G17080 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G17080" - Ribosomal protein L18ae family in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G17080Ribosomal protein L18ae family; BEST Arabidopsis thaliana protein match is- Ribosomal protein L18ae family (TAIR-AT1G53560.1); Has 119 Blast hits to 119 proteins in 14 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (154 aa)    
Predicted Functional Partners:
VAP27-1
Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2 (256 aa)
     
      0.769
WIP1
WPP domain interacting protein 1; Mediates and enhances the nuclear envelope docking of RANGAP proteins mediated by WIT1 and WIT2 in the undifferentiated cells of root tips. As component of the SUN-WIP-WIT2-KAKU1 complex, mediates the transfer of cytoplasmic forces to the nuclear envelope (NE), leading to nuclear shape changes (489 aa)
       
      0.762
AT4G26450
Uncharacterized protein At4g26450; Unknown protein; Has 614 Blast hits to 492 proteins in 137 species- Archae - 0; Bacteria - 94; Metazoa - 255; Fungi - 76; Plants - 69; Viruses - 0; Other Eukaryotes - 120 (source- NCBI BLink) (708 aa)
       
      0.762
NLM1
NOD26-like major intrinsic protein 1; An aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance (296 aa)
       
      0.762
AT3G10260
Reticulon-like protein B8; Reticulon family protein; Contains the following InterPro domains- Reticulon (InterPro-IPR003388); BEST Arabidopsis thaliana protein match is- Reticulon family protein (TAIR-AT3G61560.1); Has 1060 Blast hits to 1060 proteins in 78 species- Archae - 0; Bacteria - 0; Metazoa - 591; Fungi - 0; Plants - 458; Viruses - 0; Other Eukaryotes - 11 (source- NCBI BLink) (267 aa)
       
      0.762
NAC001
NAC domain containing protein 1; Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (429 aa)
       
      0.762
AT3G53740
Ribosomal protein L36e family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, plasma membrane, membrane; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L36e (InterPro-IPR000509); BEST Arabidopsis thaliana protein match is- Ribosomal protein L36e family protein (TAIR-AT2G37600.2); Has 756 Blast hits to 755 proteins in 262 species- Archae - 0; Bacteria - 0; Metazoa - 356; Fungi - 139 [...] (112 aa)
           
  0.665
AT3G06680
Ribosomal L29e protein family; Its function is described as structural constituent of ribosome; Involved in translation, ribosome biogenesis; Located in ribosome, cytosolic large ribosomal subunit; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L29e (InterPro-IPR002673); BEST Arabidopsis thaliana protein match is- Ribosomal L29e protein family (TAIR-AT3G06700.3); Has 760 Blast hits to 760 proteins in 244 species- Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 97; Plants - 113; Viruses - 0; Other Eukaryot [...] (83 aa)
           
  0.665
AT1G27400
Ribosomal protein L22p/L17e family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in ribosome, cytosolic large ribosomal subunit, plasma membrane, chloroplast, vacuole; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L22/L17 (InterPro-IPR001063), Ribosomal protein L22/L17, eukaryotic/archaeal (InterPro-IPR005721), Ribosomal protein L22/L17, conserved site (InterPro-IPR018260); BEST Arabidopsis thaliana protein match is- Ribosomal protein L22p/L17e [...] (176 aa)
           
  0.665
AT3G62870
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, membrane; Expressed in 25 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L7A/L8 (InterPro-IPR001921), Ribosomal protein L7Ae/L8/Nhp2 family (InterPro-IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro-IPR004038), Ribosomal protein L7Ae conserved site (InterPro-IPR004037); BEST Arabidops [...] (256 aa)
           
  0.664
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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