STRINGSTRING
AT1G17680 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G17680" - Tetratricopeptide repeat in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G17680Tetratricopeptide repeat (TPR)-containing protein (896 aa)    
Predicted Functional Partners:
AT5G24450
Transcription factor IIIC, subunit 5 (554 aa)
     
  0.990
AT3G49410
Transcription factor IIIC, subunit 5 (574 aa)
     
  0.987
AT3G09360
Cyclin/Brf1-like TBP-binding protein (604 aa)
     
  0.971
AT4G35540
Zinc ion binding protein (527 aa)
     
  0.969
AT2G45100
Cyclin/Brf1-like TBP-binding protein (557 aa)
     
  0.969
MEE65
Maternal effect embryo arrest 65 (548 aa)
     
  0.969
AT1G30455
Transcription regulators;translation initiation factors;zinc ion binding;transcription activators (254 aa)
     
  0.969
CPSF160
Cleavage and polyadenylation specificity factor 160; CPSF plays a key role in pre-mRNA 3’-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction (1442 aa)
     
      0.968
CPSF100
Cleavage and polyadenylation specificity factor 100; CPSF plays a key role in pre-mRNA 3’-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition (By similarity). Required for antisense-RNA- mediated gene silencing (PubMed-17008405) (739 aa)
     
      0.964
AT5G09380
RNA polymerase III RPC4 (272 aa)
     
 
  0.939
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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