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PRA1.F1 protein (Arabidopsis thaliana) - STRING interaction network
"PRA1.F1" - PRA1 family protein F1 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRA1.F1PRA1 family protein F1; May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments (180 aa)    
Predicted Functional Partners:
AT3G48200
Uncharacterized protein (1088 aa)
           
  0.630
AT1G12630
Ethylene-responsive transcription factor ERF027; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity) (192 aa)
           
  0.630
AT1G21520
Uncharacterized protein (66 aa)
           
  0.603
HTB4
Histone H2B; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (150 aa)
           
  0.598
AT3G60490
Ethylene-responsive transcription factor ERF035; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity) (256 aa)
           
  0.560
FRS12
FAR1-related sequence 12; Putative transcription activator involved in regulating light control of development (788 aa)
           
  0.558
Cpn60beta4
Chaperonin-60beta4; Involved specifically in the folding of NDHH, a subunit of the chloroplast NADH dehydrogenase-like complex (NDH) (611 aa)
           
  0.557
DAA1
DUO1-activated ATPase 1 (829 aa)
     
   
  0.519
AT1G03400
Putative 1-aminocyclopropane-1-carboxylate oxidase (351 aa)
           
  0.510
AT1G19715
Mannose-binding lectin-like protein (601 aa)
           
  0.495
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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