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STRINGSTRING
AT1G17744 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G17744" - Uncharacterized protein At1g17740 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurence
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[Homology]
Score
AT1G17744Uncharacterized protein At1g17740; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in stem; Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (146 aa)    
Predicted Functional Partners:
AT1G28100
Protein NEOXANTHIN-DEFICIENT 1; Required for neoxanthin biosynthesis. Probably not involved directly in the enzymatic conversion of violaxanthin to neoxanthin. Is necessary but not sufficient for neoxanthin synthesis (290 aa)
           
  0.951
SCPL45
Serine carboxypeptidase-like 45; Probable carboxypeptidase (461 aa)
           
  0.840
AT1G13340
Regulator of Vps4 activity in the MVB pathway protein; Contains the following InterPro domains- Protein of unknown function DUF292, eukaryotic (InterPro-IPR005061); BEST Arabidopsis thaliana protein match is- Regulator of Vps4 activity in the MVB pathway protein (TAIR-AT1G34220.2); Has 628 Blast hits to 628 proteins in 152 species- Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 130; Plants - 284; Viruses - 0; Other Eukaryotes - 50 (source- NCBI BLink) (409 aa)
     
   
  0.777
HOP2
Encodes the Arabidopsis Hop2 homologue. In other species, Hop2 is proposed to be involved in inter-homolog bias in double strand break repair (226 aa)
           
  0.732
AT2G33796
FBD-like domain family protein; Contains the following InterPro domains- FBD-like (InterPro-IPR006566); BEST Arabidopsis thaliana protein match is- F-box/RNI-like superfamily protein (TAIR-AT5G25860.1); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (109 aa)
           
  0.670
AT2G02795
Unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (168 aa)
           
  0.660
AT4G34070
Calcium-binding EF-hand family protein; Its function is described as calcium ion binding; Involved in biological_process unknown; Located in chloroplast; Contains the following InterPro domains- EF-HAND 2 (InterPro-IPR018249), EF-hand-like domain (InterPro-IPR011992); BEST Arabidopsis thaliana protein match is- TLD-domain containing nucleolar protein (TAIR-AT5G06260.1); Has 171 Blast hits to 168 proteins in 64 species- Archae - 0; Bacteria - 0; Metazoa - 68; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes - 55 (source- NCBI BLink) (313 aa)
           
  0.646
AT2G41590
Putative Ta11-like non-LTR retroelement protein; Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G25200.1); Has 221 Blast hits to 217 proteins in 10 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 221; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (367 aa)
           
  0.641
AT2G33793
DNA ligase-like protein; Unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (212 aa)
           
  0.612
PGDH
D-3-phosphoglycerate dehydrogenase 2, chloroplastic; Involved in the plastidial phosphorylated pathway of serine biosynthesis (PPSB); Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family (651 aa)
     
   
  0.599
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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