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CDKD1;3 protein (Arabidopsis thaliana) - STRING interaction network
"CDKD1;3" - Cyclin-dependent kinase D1 in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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CDKD1;3Cyclin-dependent kinase D1;3; May form a stable complex with cyclin CYCH1-1 that phosphorylates human CDK2 and the C-terminal domain (CTD) of the large subunit of RNA polymerase II; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily (391 aa)    
Predicted Functional Partners:
CYCH;1
Cyclin-H1-1; Associates with CDK-2 and CDK-3 and activates the CDK kinases (336 aa)
     
  0.999
AT4G30820
Uncharacterized protein At4g30820; Cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related; Its function is described as molecular_function unknown; Involved in cell cycle; Located in nucleus; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Cdk-activating kinase assembly factor (MAT1) (InterPro-IPR004575), Cdk-activating kinase assembly factor, MAT1 (InterPro-IPR015877); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 173 [...] (178 aa)
     
  0.999
AT4G30825
Pentatricopeptide repeat-containing protein At4g30825, chloroplastic; Tetratricopeptide repeat (TPR)-like superfamily protein; Its function is described as molecular_function unknown; Involved in cell cycle; Located in nucleus; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885), Cdk-activating kinase assembly factor (MAT1) (InterPro-IPR004575); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT3G06920.1); Has 30201 Blast hits [...] (904 aa)
     
  0.999
AT1G18340
RNA polymerase II transcription factor B subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA (301 aa)
     
  0.993
XPB1
Homolog of xeroderma pigmentosum complementation group B 1; Encodes XPB1, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive [...] (767 aa)
     
  0.992
XPB2
Homolog of Xeroderma pigmentosum complementation group B 2; Encodes XPB2, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive [...] (766 aa)
     
  0.992
GTF2H2
General transcription factor IIH subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for transcription, and is involved in nucleotide excision repair (NER) of damaged DNA. Can restore UV resistance in the NER-deficient ssl1-1 yeast mutant (421 aa)
     
  0.990
AT3G61420
BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA (579 aa)
     
  0.986
AT1G55750
BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA (591 aa)
     
  0.986
NRPB1
DNA-directed RNA polymerase II subunit 1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. NRPB1 is part of the core element with the central large clef [...] (1839 aa)
     
  0.983
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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