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AT1G18340 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G18340" - RNA polymerase II transcription factor B subunit 4 in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AT1G18340RNA polymerase II transcription factor B subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA (301 aa)    
Predicted Functional Partners:
AT4G17020
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA; Belongs to the TFB2 family (482 aa)
     
  0.999
AT1G55750
BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA (591 aa)
     
  0.999
AT1G12400
RNA polymerase II transcription factor B subunit 5; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA (71 aa)
       
  0.999
UVH6
RAD3-like DNA-binding helicase protein; Putative ATP-dependent 5’-3’ DNA helicase involved in nucleotide excision repair (NER) of UV-damaged DNA. May open DNA around the damage. Essential during plant growth. May negatively regulate a common response program mediated by UV damage and heat stress, that leads to tissue death and reduced chloroplast function; Belongs to the helicase family. RAD3/XPD subfamily (758 aa)
     
  0.999
CYCH;1
Cyclin-H1-1; Associates with CDK-2 and CDK-3 and activates the CDK kinases (336 aa)
     
  0.999
GTF2H2
General transcription factor IIH subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for transcription, and is involved in nucleotide excision repair (NER) of damaged DNA. Can restore UV resistance in the NER-deficient ssl1-1 yeast mutant (421 aa)
     
  0.999
CAK4
Cyclin-dependent kinase D-2; Forms a stable complex with cyclin CYCH1-1 that phosphorylates human CDK2 and the C-terminal domain (CTD) of the large subunit of RNA polymerase II; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily (348 aa)
     
  0.997
AT3G61420
BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA (579 aa)
     
  0.995
AT1G62886
Nucleotide excision repair, TFIIH, subunit TTDA; Its function is described as DNA binding; Involved in nucleotide-excision repair; Located in endomembrane system; Contains the following InterPro domains- Nucleotide excision repair, TFIIH, subunit TTDA (InterPro-IPR009400); BEST Arabidopsis thaliana protein match is- Nucleotide excision repair, TFIIH, subunit TTDA (TAIR-AT1G12400.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (72 aa)
       
  0.995
AT4G30820
Uncharacterized protein At4g30820; Cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related; Its function is described as molecular_function unknown; Involved in cell cycle; Located in nucleus; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Cdk-activating kinase assembly factor (MAT1) (InterPro-IPR004575), Cdk-activating kinase assembly factor, MAT1 (InterPro-IPR015877); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 173 [...] (178 aa)
     
  0.995
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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