| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AT1G12400 | AT1G18340 | AT1G12400.1 | AT1G18340.1 | RNA polymerase II transcription factor B subunit 5; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | RNA polymerase II transcription factor B subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | 0.999 |
| AT1G12400 | AT1G55750 | AT1G12400.1 | AT1G55750.1 | RNA polymerase II transcription factor B subunit 5; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | 0.999 |
| AT1G12400 | AT1G62886 | AT1G12400.1 | AT1G62886.1 | RNA polymerase II transcription factor B subunit 5; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | Nucleotide excision repair, TFIIH, subunit TTDA; Its function is described as DNA binding; Involved in nucleotide-excision repair; Located in endomembrane system; Contains the following InterPro domains- Nucleotide excision repair, TFIIH, subunit TTDA (InterPro-IPR009400); BEST Arabidopsis thaliana protein match is- Nucleotide excision repair, TFIIH, subunit TTDA (TAIR-AT1G12400.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) | 0.900 |
| AT1G12400 | AT3G61420 | AT1G12400.1 | AT3G61420.1 | RNA polymerase II transcription factor B subunit 5; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | 0.993 |
| AT1G12400 | AT4G17020 | AT1G12400.1 | AT4G17020.3 | RNA polymerase II transcription factor B subunit 5; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA; Belongs to the TFB2 family | 0.997 |
| AT1G12400 | AT4G30820 | AT1G12400.1 | AT4G30820.1 | RNA polymerase II transcription factor B subunit 5; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | Uncharacterized protein At4g30820; Cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related; Its function is described as molecular_function unknown; Involved in cell cycle; Located in nucleus; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Cdk-activating kinase assembly factor (MAT1) (InterPro-IPR004575), Cdk-activating kinase assembly factor, MAT1 (InterPro-IPR015877); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 173 [...] | 0.989 |
| AT1G12400 | CAK4 | AT1G12400.1 | AT1G66750.1 | RNA polymerase II transcription factor B subunit 5; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | Cyclin-dependent kinase D-2; Forms a stable complex with cyclin CYCH1-1 that phosphorylates human CDK2 and the C-terminal domain (CTD) of the large subunit of RNA polymerase II; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily | 0.961 |
| AT1G12400 | CYCH;1 | AT1G12400.1 | AT5G27620.1 | RNA polymerase II transcription factor B subunit 5; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | Cyclin-H1-1; Associates with CDK-2 and CDK-3 and activates the CDK kinases | 0.994 |
| AT1G12400 | GTF2H2 | AT1G12400.1 | AT1G05055.1 | RNA polymerase II transcription factor B subunit 5; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | General transcription factor IIH subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for transcription, and is involved in nucleotide excision repair (NER) of damaged DNA. Can restore UV resistance in the NER-deficient ssl1-1 yeast mutant | 0.994 |
| AT1G12400 | UVH6 | AT1G12400.1 | AT1G03190.2 | RNA polymerase II transcription factor B subunit 5; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | RAD3-like DNA-binding helicase protein; Putative ATP-dependent 5’-3’ DNA helicase involved in nucleotide excision repair (NER) of UV-damaged DNA. May open DNA around the damage. Essential during plant growth. May negatively regulate a common response program mediated by UV damage and heat stress, that leads to tissue death and reduced chloroplast function; Belongs to the helicase family. RAD3/XPD subfamily | 0.993 |
| AT1G18340 | AT1G12400 | AT1G18340.1 | AT1G12400.1 | RNA polymerase II transcription factor B subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | RNA polymerase II transcription factor B subunit 5; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | 0.999 |
| AT1G18340 | AT1G55750 | AT1G18340.1 | AT1G55750.1 | RNA polymerase II transcription factor B subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | 0.999 |
| AT1G18340 | AT1G62886 | AT1G18340.1 | AT1G62886.1 | RNA polymerase II transcription factor B subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | Nucleotide excision repair, TFIIH, subunit TTDA; Its function is described as DNA binding; Involved in nucleotide-excision repair; Located in endomembrane system; Contains the following InterPro domains- Nucleotide excision repair, TFIIH, subunit TTDA (InterPro-IPR009400); BEST Arabidopsis thaliana protein match is- Nucleotide excision repair, TFIIH, subunit TTDA (TAIR-AT1G12400.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) | 0.995 |
| AT1G18340 | AT3G61420 | AT1G18340.1 | AT3G61420.1 | RNA polymerase II transcription factor B subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | 0.995 |
| AT1G18340 | AT4G17020 | AT1G18340.1 | AT4G17020.3 | RNA polymerase II transcription factor B subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA; Belongs to the TFB2 family | 0.999 |
| AT1G18340 | AT4G30820 | AT1G18340.1 | AT4G30820.1 | RNA polymerase II transcription factor B subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | Uncharacterized protein At4g30820; Cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related; Its function is described as molecular_function unknown; Involved in cell cycle; Located in nucleus; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Cdk-activating kinase assembly factor (MAT1) (InterPro-IPR004575), Cdk-activating kinase assembly factor, MAT1 (InterPro-IPR015877); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 173 [...] | 0.995 |
| AT1G18340 | CAK4 | AT1G18340.1 | AT1G66750.1 | RNA polymerase II transcription factor B subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | Cyclin-dependent kinase D-2; Forms a stable complex with cyclin CYCH1-1 that phosphorylates human CDK2 and the C-terminal domain (CTD) of the large subunit of RNA polymerase II; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily | 0.997 |
| AT1G18340 | CYCH;1 | AT1G18340.1 | AT5G27620.1 | RNA polymerase II transcription factor B subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | Cyclin-H1-1; Associates with CDK-2 and CDK-3 and activates the CDK kinases | 0.999 |
| AT1G18340 | GTF2H2 | AT1G18340.1 | AT1G05055.1 | RNA polymerase II transcription factor B subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | General transcription factor IIH subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for transcription, and is involved in nucleotide excision repair (NER) of damaged DNA. Can restore UV resistance in the NER-deficient ssl1-1 yeast mutant | 0.999 |
| AT1G18340 | UVH6 | AT1G18340.1 | AT1G03190.2 | RNA polymerase II transcription factor B subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA | RAD3-like DNA-binding helicase protein; Putative ATP-dependent 5’-3’ DNA helicase involved in nucleotide excision repair (NER) of UV-damaged DNA. May open DNA around the damage. Essential during plant growth. May negatively regulate a common response program mediated by UV damage and heat stress, that leads to tissue death and reduced chloroplast function; Belongs to the helicase family. RAD3/XPD subfamily | 0.999 |
