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AT1G18540 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G18540" - Ribosomal protein L6 family protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G18540Ribosomal protein L6 family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in 8 components; Expressed in 25 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Ribosomal protein L6, N-terminal (InterPro-IPR005568), Ribosomal protein L6E (InterPro-IPR000915); BEST Arabidopsis thaliana protein match is- Ribosomal protein L6 family protein (TAIR-AT1G74050.1); Has 758 Blast hits to 758 proteins in 286 species- Archae - 33; Bacteria - 0; Metazoa - 332; Fungi - 149; Plants - 117; Viruses - 0 [...] (233 aa)    
Predicted Functional Partners:
EMB1080
Nucleic acid-binding, OB-fold-like protein; Embryo defective 1080 (EMB1080); Its function is described as structural constituent of ribosome; Involved in translation, embryo development ending in seed dormancy; Located in cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Nucleic acid-binding, OB-fold-like (InterPro-IPR016027), Nucleic acid-binding, OB-fold (InterPro-IPR012340), Ribosomal protein S17, archaeal (InterPro-IPR019978), Ribosomal protein S17 [...] (160 aa)
   
  0.999
RPL23AB
60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA (154 aa)
   
  0.999
RPS13A
Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development; Belongs to the universal ribosomal protein uS15 family (151 aa)
     
  0.999
RPL23AA
Encodes a 60S ribosomal protein L23aA (AtrpL23aA). Paralog of RLPL23aB (154 aa)
   
  0.999
emb2386
Ribosomal protein L19e family protein; Embryo defective 2386 (emb2386); Its function is described as structural constituent of ribosome; Involved in translation, ribosome biogenesis, embryo development ending in seed dormancy; Located in 6 components; Expressed in 25 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Ribosomal protein L19/L19e (InterPro-IPR000196), Ribosomal protein L19/L19e, domain 3 (InterPro-IPR015974), Ribosomal protein L19/L19e, domain 1 (InterPro-IPR015972); BEST Arabidopsis thaliana protein match is- Ribosomal protein L [...] (214 aa)
   
  0.999
RPL18
Encodes cytoplasmic ribosomal protein L18 (187 aa)
     
  0.999
RPL5A
60S ribosomal protein L5-1; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl- transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome throu [...] (301 aa)
   
  0.999
AT5G27850
Ribosomal protein L18e/L15 superfamily protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in cytosolic ribosome, cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L18e (InterPro-IPR000039), Ribosomal protein L18e/L15 (InterPro-IPR021131); BEST Arabidopsis thaliana protein match is- ribosomal protein L18 (TAIR-AT3G05590.1); Has 1807 Blast hits to 1807 proteins in 277 species- A [...] (187 aa)
     
  0.999
AT5G02870
Ribosomal protein L4/L1 family; Its function is described as structural constituent of ribosome; Involved in translation; Located in 8 components; Expressed in 26 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Ribosomal protein L4/L1e (InterPro-IPR002136), Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro-IPR013000); BEST Arabidopsis thaliana protein match is- Ribosomal protein L4/L1 family (TAIR-AT3G09630.1); Has 1138 Blast hits to 1137 proteins in 402 species- Archae - 316; Bacteria - 12; Metazoa - 270; Fungi - 177; [...] (407 aa)
   
  0.999
AT4G16720
Ribosomal protein L23/L15e family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, plasma membrane; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L15e (InterPro-IPR000439), Ribosomal protein L23/L15e, core (InterPro-IPR012678), Ribosomal protein L15e, conserved site (InterPro-IPR020925); BEST Arabidopsis thaliana protein match is- Ribosomal protein L23/L15e family protein (TAIR-AT4 [...] (204 aa)
     
  0.999
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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