STRINGSTRING
IBS1 protein (Arabidopsis thaliana) - STRING interaction network
"IBS1" - IMPAIRED IN BABA-INDUCED STERILITY 1 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IBS1IMPAIRED IN BABA-INDUCED STERILITY 1 (709 aa)    
Predicted Functional Partners:
AT5G45190
cyclin-T1-5 (590 aa)
     
  0.989
CYCT1;4
cyclin-T1-4 (541 aa)
     
  0.989
CYCT1;2
Cyclin-T1-2 (460 aa)
     
  0.989
CYCT1;1
Cyclin T1-1 (247 aa)
     
  0.989
CYCT1;3
cyclin-T1-3 (317 aa)
     
  0.989
KTF1
Kow domain-containing transcription factor 1; Effector of RNA-directed DNA methylation (RdDM) triggered by small interfering RNAs (siRNAs, 24-nt RNAs). Functions as an adapter protein that binds scaffold transcripts generated by polymerase V and recruits AGO4 and AGO4-bound siRNAs to form an RdDM effector complex (PubMed-19410546, PubMed-19343051). Promotes the expression of 24-nt RNAs (PubMed-19343051). Required for the initial establishment of DNA methylation (PubMed-21150311). Together with AGO4, required for transcriptional gene silencing (TGS) by DNA methylation and repressive his [...] (1493 aa)
     
  0.979
GTA2
Global transcription factor group A2; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (By similarity) (1041 aa)
     
  0.979
AT2G34210
Transcription elongation factor Spt5; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (By similarity) (989 aa)
     
  0.979
NRPB1
RNA polymerase II large subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. NRPB1 is part of the core element with the central large cleft, the cl [...] (1839 aa)
     
  0.979
CYCH;1
Cyclin H;1; Associates with CDK-2 and CDK-3 and activates the CDK kinases (336 aa)
     
  0.978
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (10%) [HD]