• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G18830 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G18830" - Transducin/WD40 repeat-like superfamily protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G18830Transducin/WD40 repeat-like superfamily protein; Required for protein transport from the endoplasmic reticulum to the Golgi apparatus (969 aa)    
Predicted Functional Partners:
ERMO2
Protein transport protein Sec24-like At3g07100; Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins- the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex (By similarity) (1038 aa)
     
  0.999
AT5G43670
Sec23/Sec24 protein transport family protein; Its function is described as transporter activity, zinc ion binding; Involved in intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; Located in COPII vesicle coat; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Sec23/Sec24, helical domain (InterPro-IPR006900), Sec23/Sec24 beta-sandwich (InterPro-IPR012990), Sec23/Sec24, trunk domain (InterPro-IPR006896), Zinc finger, Sec23/Sec24-type (InterPro-IPR006895), Gelsolin domain (InterPro-IPR007123); BEST [...] (794 aa)
     
  0.999
AT3G23660
Sec23/Sec24 protein transport family protein; Its function is described as transporter activity, zinc ion binding; Involved in intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; Located in COPII vesicle coat; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Sec23/Sec24, helical domain (InterPro-IPR006900), Sec23/Sec24 beta-sandwich (InterPro-IPR012990), Sec23/Sec24, trunk domain (InterPro-IPR006896), Zinc finger, Sec23/Sec24-type (InterPro-IPR006895), Gelsolin domain (InterPro-IPR007123); BEST [...] (791 aa)
     
  0.999
AT2G21630
Sec23/Sec24 protein transport family protein; Its function is described as transporter activity, zinc ion binding; Involved in intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; Located in COPII vesicle coat; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Sec23/Sec24, helical domain (InterPro-IPR006900), Sec23/Sec24 beta-sandwich (InterPro-IPR012990), Sec23/Sec24, trunk domain (InterPro-IPR006896), Zinc finger, Sec23/Sec24-type (InterPro-IPR006895), Gelsolin domain (InterPro-IPR007123); BEST [...] (761 aa)
     
  0.999
AT1G05520
Sec23/Sec24 protein transport family protein; Its function is described as transporter activity, zinc ion binding; Involved in response to salt stress, transport; Located in COPII vesicle coat; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Sec23/Sec24, helical domain (InterPro-IPR006900), Sec23/Sec24 beta-sandwich (InterPro-IPR012990), Sec23/Sec24, trunk domain (InterPro-IPR006896), Zinc finger, Sec23/Sec24-type (InterPro-IPR006895), Gelsolin domain (InterPro-IPR007123); BEST Arabidopsis thaliana protein match is- Sec23/Se [...] (783 aa)
     
  0.998
AT4G14160
Sec23/Sec24 protein transport family protein; Its function is described as transporter activity, zinc ion binding; Involved in intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; Located in COPII vesicle coat; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Sec23/Sec24, helical domain (InterPro-IPR006900), Sec23/Sec24 beta-sandwich (InterPro-IPR012990), Sec23/Sec24, trunk domain (InterPro-IPR006896), Zinc finger, Sec23/Sec24-type (InterPro-IPR006895), Gelsolin domain (InterPro-IPR007123); BEST [...] (773 aa)
     
  0.998
AT4G32640
Protein transport protein Sec24-like At4g32640; Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins- the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex (By similarity) (1080 aa)
     
  0.998
CEF
Protein transport protein Sec24-like CEF; Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins- the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex (By similarity) (1096 aa)
     
  0.998
AT2G30050
Transducin family protein / WD-40 repeat family protein; Required for protein transport from the endoplasmic reticulum to the Golgi apparatus (302 aa)
     
  0.997
AT3G01340
Transducin/WD40 repeat-like superfamily protein; Required for protein transport from the endoplasmic reticulum to the Golgi apparatus (302 aa)
     
  0.996
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (7%) [HD]