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AT1G18850 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G18850" - Uncharacterized protein At1g18850 in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G18850Uncharacterized protein At1g18850; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in nucleolus; Expressed in 22 plant structures; Expressed during 13 growth stages; Has 40 Blast hits to 40 proteins in 13 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (399 aa)    
Predicted Functional Partners:
PPR596
Pentatricopeptide repeat-containing protein At1g80270, mitochondrial; PENTATRICOPEPTIDE REPEAT 596 (PPR596); Its function is described as DNA binding; Involved in biological_process unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT1G15480.1); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - [...] (596 aa)
     
        0.834
PUM24
Pumilio homolog 24; Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3’ UTR of target mRNA transcripts (641 aa)
     
        0.832
AT1G31660
Bystin-like protein; Contains the following InterPro domains- Bystin (InterPro-IPR007955); Has 475 Blast hits to 467 proteins in 210 species- Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source- NCBI BLink) (444 aa)
     
        0.828
PWP2
Periodic tryptophan protein 2; Involved in nucleolar processing of pre-18S ribosomal RNA. Plays a role early in ribosome biogenesis, especially in the maturation of 5.8S rRNA. Required for guard cell functions (900 aa)
     
        0.828
AT3G13230
RNA-binding KH domain-containing protein; Its function is described as RNA binding; Located in cellular_component unknown; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- K Homology, type 1, subgroup (InterPro-IPR018111), K Homology (InterPro-IPR004087); Has 734 Blast hits to 734 proteins in 323 species- Archae - 189; Bacteria - 0; Metazoa - 158; Fungi - 192; Plants - 83; Viruses - 0; Other Eukaryotes - 112 (source- NCBI BLink) (215 aa)
     
        0.827
AT4G28450
WD repeat and SOF domain-containing protein 1; This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase (452 aa)
     
        0.825
AT3G23620
Ribosomal RNA processing Brix domain protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in nucleolus; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Brix domain (InterPro-IPR007109); Has 435 Blast hits to 425 proteins in 212 species- Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 138; Plants - 54; Viruses - 0; Other Eukaryotes - 91 (source- NCBI BLink) (314 aa)
     
        0.825
SWA1
Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant (530 aa)
     
        0.810
AT5G15550
Transducin/WD40 repeat-like superfamily protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family (433 aa)
     
        0.793
AT5G06550
F-box protein At5g06550; Contains the following InterPro domains- Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro-IPR003347), F-box domain, Skp2-like (InterPro-IPR022364), Transcription factor jumonji (InterPro-IPR013129); BEST Arabidopsis thaliana protein match is- transferases, transferring glycosyl groups (TAIR-AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species- Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source- NCBI BLink) (502 aa)
     
        0.790
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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