• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G18900 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G18900" - Pentatricopeptide repeat in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G18900Pentatricopeptide repeat (PPR) superfamily protein; Expressed in 15 plant structures; Expressed during 6 growth stages; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885), Smr protein/MutS2 C-terminal (InterPro-IPR002625); BEST Arabidopsis thaliana protein match is- Pentatricopeptide repeat (PPR) superfamily protein (TAIR-AT1G74750.1) (886 aa)    
Predicted Functional Partners:
AT2G17033
Pentatricopeptide (PPR) repeat-containing protein; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885), Smr protein/MutS2 C-terminal (InterPro-IPR002625); BEST Arabidopsis thaliana protein match is- Pentatricopeptide repeat (PPR) superfamily protein (TAIR-AT5G48730.1); Has 2363 Blast hits to 1770 proteins in 90 species- Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2346; Viruses - 0; Other Eukaryotes - 15 (source- NCBI BLink) (505 aa)
           
  0.832
AT1G65070
DNA mismatch repair protein MutS, type 2; Its function is described as damaged DNA binding, mismatched DNA binding, ATP binding; Involved in mismatch repair, maintenance of fidelity involved in DNA-dependent DNA replication; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- DNA mismatch repair protein MutS, core (InterPro-IPR007696), DNA mismatch repair protein MutS, type 2 (InterPro-IPR005747), DNA mismatch repair protein MutS, C-terminal (InterPro-IPR000432), Smr protein/MutS2 C-terminal (InterPro-IPR002625); BEST Arabidopsi [...] (876 aa)
           
  0.771
NUDT21
Nudix hydrolase 21, chloroplastic; Probably mediates the hydrolysis of some nucleoside diphosphate derivatives (198 aa)
           
  0.465
NUDT4
Nudix hydrolase homolog 4; Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP- ribose as substrates; however the relevance of such substrates in vivo is unclear (207 aa)
           
  0.465
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (8%) [HD]