STRINGSTRING
AT1G19020 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G19020" - Uncharacterized protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G19020Uncharacterized protein (86 aa)    
Predicted Functional Partners:
CPSF160
Cleavage and polyadenylation specificity factor 160; CPSF plays a key role in pre-mRNA 3’-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction (1442 aa)
     
  0.892
AT5G25930
Protein kinase family protein with leucine-rich repeat domain (1005 aa)
     
 
  0.882
BCS1
Cytochrome BC1 synthesis (576 aa)
   
   
  0.872
FIP1[V]
FIP1 [V]-like protein; Essential gene (PubMed-16282318). Component of the cleavage and polyadenylation specificity factor (CPSF) complex that plays a key role in pre-mRNA 3’-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. FIP1L1 contributes to poly(A) site recognition and stimulates poly(A) addition. Binds to U-rich RNA sequence elements surrounding the poly(A) site. May act to tether poly(A) polymerase to the CPSF complex (By similarity) (1196 aa)
     
 
  0.868
WRKY33
WRKY DNA-binding protein 33; Transcription factor. Interacts specifically with the W box (5’-TTGAC[CT]-3’), a frequently occurring elicitor-responsive cis-acting element. Involved in defense responses. Required for resistance to the necrotrophic fungal pathogen B.cinerea (PubMed-17059405, PubMed-21990940). Regulates the antagonistic relationship between defense pathways mediating responses to the bacterial pathogen P. syringae and the necrotrophic pathogen B.cinerea (PubMed-17059405). Required for the phytoalexin camalexin synthesis following infection with B.cinerea. Acts as positive [...] (519 aa)
     
   
  0.864
SYP122
Syntaxin-122; Vesicle trafficking protein that functions in the secretory pathway (341 aa)
     
        0.863
GILP
Uncharacterized protein (134 aa)
     
        0.858
CNI1
Carbon/nitrogen insensitive 1; E3 ubiquitin-protein ligase that is required for the plant C/N response during seedling growth transition. May be involved in the early steps of the plant defense signaling pathway (368 aa)
     
        0.848
AT4G20830
Reticuline oxidase-like protein (570 aa)
     
        0.844
NUDT7
Nudix hydrolase 7 (322 aa)
     
        0.840
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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