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AT1G19070 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G19070" - F-box family protein in Arabidopsis thaliana
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
protein homology
Your Input:
Gene Fusion
AT1G19070F-box family protein; Contains the following InterPro domains- F-box domain, cyclin-like (InterPro-IPR001810), F-box domain, Skp2-like (InterPro-IPR022364); BEST Arabidopsis thaliana protein match is- F-box/RNI-like superfamily protein (TAIR-AT4G22280.1); Has 1388 Blast hits to 1366 proteins in 25 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1388; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (83 aa)    
Predicted Functional Partners:
Unknown protein; Has 25 Blast hits to 25 proteins in 6 species- Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (289 aa)
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4; May be involved in pre-mRNA splicing (700 aa)
GDSL-like Lipase/Acylhydrolase superfamily protein; Its function is described as structural constituent of cell wall, lipase activity, hydrolase activity, acting on ester bonds; Involved in lipid metabolic process; Contains the following InterPro domains- Pistil-specific extensin-like protein (InterPro-IPR003882), Lipase, GDSL, active site (InterPro-IPR008265), Lipase, GDSL (InterPro-IPR001087); BEST Arabidopsis thaliana protein match is- GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR-AT1G20132.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - [...] (534 aa)
Probable beta-1,3-galactosyltransferase 8; Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue (403 aa)
Predicted AT-hook DNA-binding family protein; Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs). Encodes a nuclear matrix protein that acts in the maintenance of genomic integrity by silencing TEs and repeat- containing genes through epigenetic machinery. Acts as a chromatin remodeling factor that modifies the architecture of FLC and FWA chromatin by modulating both H3 acetylation and methylation leading to the regulation of FLC and FWA expression. Negatively regulates floral repressors including MAF4 and MAF5. Pl [...] (257 aa)
Glycine-rich protein 19; Member of Oleosin-like protein family (106 aa)
Plant self-incompatibility protein S1 family; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Expressed in 9 plant structures; Expressed during L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Contains the following InterPro domains- Plant self-incompatibility S1 (InterPro-IPR010264); BEST Arabidopsis thaliana protein match is- Plant self-incompatibility protein S1 family (TAIR-AT5G11820.1); Has 30201 Blast hits to 17322 proteins in [...] (154 aa)
Phospholipase A2 family protein; PA2 catalyzes the calcium-dependent hydrolysis of the 2- acyl groups in 3-sn-phosphoglycerides. Releases lysophospholipids (LPLs) and free fatty acids (FFAs) from membrane phospholipids in response to hormones and other external stimuli. Plays a role in pollen development and germination and tube growth (191 aa)
Glycoprotein membrane precursor GPI-anchored; BEST Arabidopsis thaliana protein match is- Glycoprotein membrane precursor GPI-anchored (TAIR-AT3G06035.1); Has 83 Blast hits to 82 proteins in 14 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (200 aa)
Proliferating cellular nuclear antigen 1; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand; Belongs to the PCNA family (263 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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