• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G19230 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G19230" - Riboflavin synthase-like superfamily protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G19230Riboflavin synthase-like superfamily protein; Calcium-dependent NADPH oxidase that generates superoxide (934 aa)    
Predicted Functional Partners:
RBOHB
Respiratory burst oxidase homolog protein B; NADPH-oxidase AtrbohB plays a role in seed after-ripening. Major producer of superoxide in germinating seeds. AtrbohB pre-mRNA is alternatively spliced in seeds in a hormonally and developmentally regulated manner. ABA caused accumulation of AtrbohB- mRNA and prevented prevented AtrbohB-a mRNA expression in fresh seeds; Belongs to the RBOH (TC 5.B.1.3) family (843 aa)
     
 
0.923
RBOHA
Respiratory burst oxidase homolog protein A; Calcium-dependent NADPH oxidase that generates superoxide; Belongs to the RBOH (TC 5.B.1.3) family (902 aa)
     
 
0.923
AT4G25090
Putative respiratory burst oxidase homolog protein G; Calcium-dependent NADPH oxidase that generates superoxide; Belongs to the RBOH (TC 5.B.1.3) family (849 aa)
     
 
0.921
RHD2
Respiratory burst oxidase homolog protein C; RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx; Belongs to the RBOH (TC 5.B.1.3) family (905 aa)
     
 
0.918
MMP
Metalloendoproteinase 2-MMP; Matrix metalloproteinases (MMPs) or matrixins may play a role in the degradation and remodeling of the extracellular matrix (ECM) during development or in response to stresses (By similarity). Required for plant growth, morphogenesis, and development with particular relevance for flowering and senescence. Active on McaPLGLDpaAR-NH(2) (QF24) and myelin basic protein (MBP) and, to some extent, on beta-casein (378 aa)
     
 
  0.913
AT3G45700
Major facilitator superfamily protein; Transporter involved in a passive nitrate efflux (548 aa)
     
 
    0.912
AT3G45710
Major facilitator superfamily protein; Transporter involved in a passive nitrate efflux (560 aa)
     
 
    0.911
AT4G11230
Probable respiratory burst oxidase homolog protein I; Calcium-dependent NADPH oxidase that generates superoxide (941 aa)
     
 
0.910
AT5G60010
Ferric reductase-like transmembrane component family protein; Calcium-dependent NADPH oxidase that generates superoxide (886 aa)
         
0.907
AT3G45810
Ferric reductase-like transmembrane component family protein; Calcium-dependent NADPH oxidase that generates superoxide (912 aa)
         
0.907
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (11%) [HD]