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AT1G19240 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G19240" - Uncharacterized protein At1g19240 in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
AT1G19240Uncharacterized protein At1g19240; Unknown protein; Has 24 Blast hits to 24 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (104 aa)    
Predicted Functional Partners:
AT1G27350.1
Ribosome associated membrane protein RAMP4; Contains the following InterPro domains- Ribosome associated membrane RAMP4 (InterPro-IPR010580); BEST Arabidopsis thaliana protein match is- Ribosome associated membrane protein RAMP4 (TAIR-AT1G27330.1); Has 348 Blast hits to 348 proteins in 106 species- Archae - 0; Bacteria - 0; Metazoa - 210; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 38 (source- NCBI BLink) (68 aa)
     
   
  0.907
AT2G42710
Ribosomal protein L1p/L10e family; Its function is described as structural constituent of ribosome, RNA binding; Involved in translation, RNA processing; Located in ribosome, intracellular, large ribosomal subunit; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L1 (InterPro-IPR002143), Ribosomal protein L1, bacterial-type (InterPro-IPR005878), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro-IPR016094); BEST Arabidopsis thaliana protein match is- Ribosomal protein L1p/L10e family (TAIR-AT3G63490 [...] (415 aa)
           
  0.903
AT1G05550
Protein of unknown function (DUF295); Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 6 plant structures; Expressed during 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Contains the following InterPro domains- Protein of unknown function DUF295 (InterPro-IPR005174); BEST Arabidopsis thaliana protein match is- Protein of unknown function (DUF295) (TAIR-AT1G05540.1) (385 aa)
           
  0.903
AT3G06240
F-box/kelch-repeat protein At3g06240; F-box family protein; Contains the following InterPro domains- F-box domain, cyclin-like (InterPro-IPR001810), F-box domain, Skp2-like (InterPro-IPR022364), F-box associated domain, type 1 (InterPro-IPR006527), F-box associated interaction domain (InterPro-IPR017451); BEST Arabidopsis thaliana protein match is- F-box and associated interaction domains-containing protein (TAIR-AT4G12560.2); Has 2015 Blast hits to 1993 proteins in 48 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2013; Viruses - 0; Other Eukaryotes - 2 (source- N [...] (427 aa)
           
  0.900
PGL5
Probable 6-phosphogluconolactonase 3; Hydrolysis of 6-phosphogluconolactone to 6- phosphogluconate (252 aa)
           
  0.899
AT1G27330
Ribosome associated membrane protein RAMP4; Contains the following InterPro domains- Ribosome associated membrane RAMP4 (InterPro-IPR010580); BEST Arabidopsis thaliana protein match is- Ribosome associated membrane protein RAMP4 (TAIR-AT1G27350.1); Has 348 Blast hits to 348 proteins in 106 species- Archae - 0; Bacteria - 0; Metazoa - 210; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 38 (source- NCBI BLink) (68 aa)
           
  0.899
AT4G14420
HR-like lesion-inducing protein-related; Located in endoplasmic reticulum; Expressed in 23 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- HR-like lesion-inducer (InterPro-IPR008637); BEST Arabidopsis thaliana protein match is- HR-like lesion-inducing protein-related (TAIR-AT1G04340.1); Has 163 Blast hits to 163 proteins in 27 species- Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 12 (source- NCBI BLink) (158 aa)
     
   
  0.844
MEB1
Vacuolar iron transporter (VIT) family protein; May sequester excess cytosolic iron and manganese into endoplasmic reticulum to reduce metal ion toxicity. Not essential for the accumulation of ER body components, including PYK10; Belongs to the CCC1 family (611 aa)
           
  0.838
ATG8B
Ubiquitin-like superfamily protein; Ubiquitin-like modifier involved in autophagosomes formation. May mediate the delivery of the autophagosomes to the vacuole via the microtubule cytoskeleton (122 aa)
           
  0.740
AT5G49180
Plant invertase/pectin methylesterase inhibitor superfamily; Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds; In the C-terminal section; belongs to the pectinesterase family (571 aa)
           
  0.735
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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