STRINGSTRING
AT1G19460 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G19460" - Kelch repeat-containing protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G19460Kelch repeat-containing protein (416 aa)    
Predicted Functional Partners:
AT5G19175
Putative defensin-like protein 48 (82 aa)
     
        0.438
LCR40
Putative defensin-like protein 186 (74 aa)
     
        0.438
AT1G20940
F-box protein (414 aa)
     
        0.438
HDG3
Homeodomain GLABROUS 3; Probable transcription factor (725 aa)
     
        0.437
LCR29
Putative defensin-like protein 131 (83 aa)
     
        0.437
GSTU15
Glutathione S-transferase TAU 15; May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides (233 aa)
     
        0.437
AT5G63250
Carbohydrate-binding X8 domain-containing protein (132 aa)
     
        0.436
AT5G05030
Uncharacterized protein (363 aa)
     
        0.436
PKR2
PICKLE RELATED 2; Chromatin remodeling factor that represses the expression of embryonic trait genes upon and after seed germination and thus enables the developmental switch to post- germinative growth (1202 aa)
     
        0.436
LCR49
Defensin-like protein 50 (80 aa)
     
        0.436
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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