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AT1G19720 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G19720" - Pentatricopeptide repeat-containing protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G19720Pentatricopeptide repeat-containing protein (894 aa)    
Predicted Functional Partners:
AT1G26460
Pentatricopeptide repeat-containing protein (630 aa)
           
  0.910
AT1G53190
RING/U-box superfamily protein (494 aa)
           
  0.878
PFA-DSP5
Tyrosine specific protein phosphatase family protein (204 aa)
           
  0.848
AT3G27200
Cupredoxin superfamily protein (174 aa)
           
  0.841
PRMT7
Protein arginine methyltransferase 7; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA) (724 aa)
           
  0.810
SDG40
SET domain group 40 (491 aa)
           
  0.734
RCI1A
General regulatory factor 3; Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes (PubMed-7972511, PubMed-7870824, PubMed-16407442). Involved in the regulation of nutrient metabolism (PubMed-22104211, PubMed-21094157). Reciprocal negative transcription regulation of miR396 (PubMed-22751317). Negative regulator of constitutive freezing tolerance and cold acclimation by controlling cold-induced gene expression partially through an ethylene (ET)-dependent pathway; prevents ethylene (ET) biosynthesis, [...] (255 aa)
           
  0.633
CSD3
Copper/zinc superoxide dismutase 3; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (164 aa)
           
  0.557
AT1G49380
Cytochrome c biogenesis protein CCS1; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment (547 aa)
     
   
  0.490
SURF1
SURFEIT 1; Probably involved in the biogenesis of the COX complex (354 aa)
     
   
  0.449
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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