• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G19720 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G19720" - Pentatricopeptide repeat in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G19720Pentatricopeptide repeat (PPR-like) superfamily protein; Involved in biological_process unknown; Located in nucleus, chloroplast, cytoplasm; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT3G57430.1); Has 61333 Blast hits to 15549 proteins in 316 species- Archae - 3; Bacteria - 46; Metazoa - 404; Fungi - 515; Plants - 59134; Viruses - 0; Other Eukaryotes - 1231 (source- NCBI BLink); Belongs to the PPR family. PCMP-H subfamily (894 aa)    
Predicted Functional Partners:
NAC027
Uncharacterized protein At1g64100; NAC domain containing protein 27 (NAC027); Its function is described as sequence-specific DNA binding transcription factor activity; Involved in multicellular organismal development, regulation of transcription; Located in cellular_component unknown; Contains the following InterPro domains- No apical meristem (NAM) protein (InterPro-IPR003441); BEST Arabidopsis thaliana protein match is- pentatricopeptide (PPR) repeat-containing protein (TAIR-AT1G64100.2); Has 1230 Blast hits to 1227 proteins in 58 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi [...] (161 aa)
           
  0.831
AT1G26460
Pentatricopeptide repeat-containing protein At1g26460, mitochondrial; Tetratricopeptide repeat (TPR)-like superfamily protein; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Pentatricopeptide repeat (PPR) superfamily protein (TAIR-AT3G53700.1); Has 8798 Blast hits to 4372 proteins in 169 species- Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 106; Plants - 8403; Viruses - 0; Other Eukaryotes - 284 (source- NCBI BLink) (630 aa)
           
  0.700
NIG1
Calcium-binding transcription factor involved in salt stress signaling (511 aa)
           
  0.628
MYC3
Basic helix-loop-helix (bHLH) DNA-binding family protein; Transcription factor involved in tryptophan, jasmonic acid (JA) and other stress-responsive gene regulation. With MYC2 and MYC4, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5’- CACGTG-3’) of promoters. Activates multiple TIFY/JAZ promoters (592 aa)
           
  0.628
MYC4
Basic helix-loop-helix (bHLH) DNA-binding family protein; Transcription factor involved in jasmonic acid (JA) gene regulation. With MYC2 and MYC3, controls additively subsets of JA- dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5’-CACGTG-3’) of promoters. Activates multiple TIFY/JAZ promoters (589 aa)
           
  0.628
AT5G21222
Pentatricopeptide repeat-containing protein At5g21222; Protein kinase family protein; Its function is described as protein serine/threonine kinase activity, protein kinase activity, ATP binding; Involved in protein amino acid phosphorylation; Located in cellular_component unknown; Contains the following InterPro domains- Serine/threonine-protein kinase domain (InterPro-IPR002290), Serine/threonine-protein kinase-like domain (InterPro-IPR017442), Protein kinase-like domain (InterPro-IPR011009), Serine/threonine-protein kinase, active site (InterPro-IPR008271), CBL-interacting protein ki [...] (831 aa)
     
   
0.600
AT5G27460
Tetratricopeptide repeat (TPR)-like superfamily protein; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT1G02150.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink); Belongs to the PPR family. P subfamily (491 aa)
           
  0.583
CRY3
Cryptochrome DASH, chloroplastic/mitochondrial; Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome; Belongs to the DNA photolyase class-1 family (526 aa)
           
  0.541
AT1G53190
RING/U-box superfamily protein; Its function is described as zinc ion binding; Contains the following InterPro domains- Zinc finger, RING-type (InterPro-IPR001841), Zinc finger, C3HC4 RING-type (InterPro-IPR018957); BEST Arabidopsis thaliana protein match is- RING/U-box superfamily protein (TAIR-AT3G15070.2); Has 8436 Blast hits to 8420 proteins in 276 species- Archae - 0; Bacteria - 0; Metazoa - 2403; Fungi - 639; Plants - 3969; Viruses - 29; Other Eukaryotes - 1396 (source- NCBI BLink) (494 aa)
           
  0.528
AIB
ABA-inducible BHLH-type transcription factor; Encodes a nuclear localized BLH domain containing transcriptional activator involved in response to ABA. Overexpression confers enhanced ABA responsiveness while loss of function mutants are ABA sensitive (566 aa)
           
  0.497
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (9%) [HD]