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AT1G19980 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G19980" - Uncharacterized protein At1g19980 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G19980Uncharacterized protein At1g19980; Cytomatrix protein-related; Has 8598 Blast hits to 6353 proteins in 629 species- Archae - 108; Bacteria - 984; Metazoa - 3794; Fungi - 795; Plants - 240; Viruses - 29; Other Eukaryotes - 2648 (source- NCBI BLink) (342 aa)    
Predicted Functional Partners:
HUB1
E3 ubiquitin-protein ligase BRE1-like 1; E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6. Required for the regulation of flowering time and defense against necrotrophic fungal pathogens. Involved in the control of seed dormancy and germination; Belongs to the BRE1 family (878 aa)
       
      0.762
AUG2
AUGMIN subunit 2; Contributes to the assembly of the acentrosomal spindle and phragmoplast microtubule arrays as part of the augmin complex (296 aa)
       
      0.762
AT1G19990
Nucleolin; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in cultured cell; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G11600.1); Has 11256 Blast hits to 7192 proteins in 541 species- Archae - 6; Bacteria - 629; Metazoa - 4714; Fungi - 936; Plants - 545; Viruses - 34; Other Eukaryotes - 4392 (source- NCBI BLink) (251 aa)
 
            0.556
HSFC1
Heat stress transcription factor C-1; Transcriptional regulator that specifically binds DNA sequence 5’-AGAAnnTTCT-3’ known as heat shock promoter elements (HSE); Belongs to the HSF family. Class C subfamily (330 aa)
       
      0.510
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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