STRINGSTRING
AT1G19980 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G19980" - Cytomatrix protein-related in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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[Homology]
Score
AT1G19980Cytomatrix protein-related (342 aa)    
Predicted Functional Partners:
AUG2
Augmin subunit 2; Contributes to the assembly of the acentrosomal spindle and phragmoplast microtubule arrays as part of the augmin complex (296 aa)
       
      0.650
HUB1
Histone mono-ubiquitination 1; E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6. Required for the regulation of flowering time and defense against necrotrophic fungal pathogens (PubMed-12535538, PubMed-17329565, PubMed-17329563, PubMed-19286969). Involved in the control of seed dormancy and [...] (878 aa)
     
      0.610
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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