STRINGSTRING
AT1G20070 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G20070" - Uncharacterized protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G20070Uncharacterized protein (193 aa)    
Predicted Functional Partners:
NEET
NEET group protein; Plays a important role in plant development, senescence, reactive oxygen homeostasis, and iron metabolism. Acts as an iron- sulfur transfer protein (108 aa)
           
  0.671
AT1G10120
Transcription factor bHLH74; Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed-24130508) (366 aa)
           
  0.635
RRP4
Ribosomal RNA processing 4; Non-catalytic component of the RNA exosome complex which has 3’->5’ exoribonuclease activity and participates in a multitude of cellular RNA processing, maturation and degradation events. In vitro, is an active and distributive 3’->5’ exonuclease requiring a free 3’-OH on the substrate and releasing nucleoside 5’-monophosphates (PubMed-11809881). Required for normal embryo development (PubMed-18160042) (322 aa)
           
  0.601
RRP41
Exonuclease RRP41 (RRP41); Non-catalytic component of the RNA exosome complex which has 3’->5’ exoribonuclease activity and participates in a multitude of cellular RNA processing, maturation and degradation events. In vitro, is a processive phosphorolytic exonuclease and requires a single-stranded poly(A) tail on the substrate RNA for its activity. Can complement the growth defect of a yeast mutant lacking RRP41 exonuclease (PubMed-10930416). Required for normal development of female gametophytes (PubMed-18160042) (241 aa)
           
  0.560
RNS2
Ribonuclease 2; May remobilize phosphate, particularly when cells senesce or when phosphate becomes limiting (259 aa)
           
  0.489
UPF3
Smg-4/UPF3-like protein; Recruits UPF2 at the cytoplasmic side of the nuclear envelope and the subsequent formation of an UPF1-UPF2-UPF3 surveillance complex (including UPF1 bound to release factors at the stalled ribosome) is believed to activate NMD. Binds spliced mRNA upstream of exon-exon junctions (By similarity). Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons (premature termination codon PTC) by associating with the nuclear exon junction complex (EJC) and serving as link between the EJC core and NMD machinery. Eliminates the production of nons [...] (484 aa)
           
  0.489
DCP1
Decapping 1; As a component of the decapping complex, involved in the degradation of mRNAs. Essential for postembryonic development (367 aa)
           
  0.474
TCP24
Transcription factor TCP24; Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary- specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed-25378179) (324 aa)
           
  0.472
XRN3
5’-3’ exoribonuclease 3; Possesses 5’->3’ exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. Degrades MIRNA-derived loops excised during miRNA maturation in the nucleus. Required for proper development (1020 aa)
           
  0.471
XRN2
Exoribonuclease 2; Possesses 5’->3’ exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. Degrades MIRNA-derived loops excised during miRNA maturation in the nucleus (1023 aa)
           
  0.449
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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