STRINGSTRING
AT1G20100 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G20100" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G20100Uncharacterized protein (285 aa)    
Predicted Functional Partners:
AT4G21215
Uncharacterized protein (199 aa)
           
  0.922
AT1G33612
Leucine-rich repeat (LRR) family protein (455 aa)
           
  0.861
AT1G33610
Leucine-rich repeat (LRR) family protein (478 aa)
           
  0.861
AT1G67210
Proline-rich domain-containing protein (405 aa)
     
   
  0.739
AT5G38600
Zinc finger CCHC domain-containing protein 8 (532 aa)
     
   
  0.736
AT1G79170
Uncharacterized protein (84 aa)
           
  0.731
AT5G44306
Uncharacterized protein (57 aa)
           
  0.730
AT4G00750
Putative methyltransferase PMT15 (633 aa)
           
  0.730
AT2G45060
Uncharacterized protein (272 aa)
           
  0.676
AT1G72910
Toll-Interleukin-Resistance domain-containing protein (380 aa)
           
  0.676
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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