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AT1G20220 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G20220" - Alba DNA/RNA-binding protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G20220Alba DNA/RNA-binding protein (315 aa)    
Predicted Functional Partners:
AT1G20230
Pentatricopeptide repeat-containing protein (760 aa)
     
   
  0.815
GAF1
GAMETOPHYTE DEFECTIVE 1 (705 aa)
     
 
  0.718
EMB1687
EMBRYO DEFECTIVE 1687; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5’-ends. Also a component of RNase MRP (By similarity) (151 aa)
     
 
  0.706
POP4
Similar to yeast POP4 (296 aa)
       
 
  0.699
ATARCA
Guanine nucleotide-binding protein subunit beta-like protein; Major component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. Involved in multiple hormone responses and developmental processes (PubMed-16829549, PubMed-18715992, PubMed-18947417). MAPK cascade scaffolding protein involved in the protease IV and ArgC signaling pathway but not the flg22 pathway (PubMed-25731164) (327 aa)
     
      0.699
GH9B5
Endoglucanase 2 (515 aa)
           
  0.671
SWA1
SLOW WALKER1; Essential protein required for nuclear division and organization during embryo sac development in female gametophyte, probably by promoting rRNA biogenesis essential for the progression of the mitotic division cycles during gametogenesis (PubMed-15634699, PubMed-15980260). Involved in nucleolar processing of pre-18S ribosomal RNA (PubMed-15980260) (530 aa)
     
        0.668
NAF1
Nuclear assembly factor 1 (801 aa)
     
   
  0.666
MIF3
Mini zinc finger; Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins (88 aa)
           
  0.630
AT4G12600
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (183 aa)
     
 
  0.628
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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