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AT1G20290 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G20290" - SWI-SNF-related chromatin binding protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G20290SWI-SNF-related chromatin binding protein (382 aa)    
Predicted Functional Partners:
AT5G14460
tRNA pseudouridine synthase B (540 aa)
     
  0.830
NAP57
Homologue of NAP57; Plays a central role in ribosomal RNA processing. Probable catalytic subunit of H/ACA small nucleolar ribonucleoprotein (H/ACA snoRNP) complex, which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine (’psi’) residues may serve to stabilize the conformation of rRNAs (By similarity) (565 aa)
     
  0.830
AT5G15750
Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (182 aa)
   
 
  0.677
ATRPAC42
DNA-directed RNA polymerase subunit (375 aa)
   
 
  0.673
RPAC43
RNA polymerase I subunit 43 (385 aa)
   
 
  0.673
At5g47320
Ribosomal protein S19; The RNA-binding domain found in RPS19 may functionally replaces the missing mitochondrial RPS13 (212 aa)
   
   
  0.661
AtCg00380
Chloroplast ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (201 aa)
   
 
  0.647
AT5G39850
Ribosomal protein S4 (197 aa)
   
 
  0.647
AT5G15200
Ribosomal protein S4 (198 aa)
   
 
  0.647
RPL3P
50S ribosomal protein L3-2; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (324 aa)
   
 
  0.626
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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