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AT1G20410 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G20410" - Pseudouridine synthase family protein in Arabidopsis thaliana
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proteins of unknown 3D structure
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experimentally determined
Predicted Interactions
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textmining
co-expression
protein homology
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AT1G20410Pseudouridine synthase family protein; Its function is described as pseudouridine synthase activity, RNA binding; Involved in pseudouridine synthesis, RNA modification; Located in cellular_component unknown; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Pseudouridine synthase, catalytic domain (InterPro-IPR020103); Has 545 Blast hits to 513 proteins in 206 species- Archae - 168; Bacteria - 1; Metazoa - 125; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 209 (source- NCBI BLink) (504 aa)    
Predicted Functional Partners:
AT1G75980
Single hybrid motif superfamily protein; Its function is described as molecular_function unknown; Involved in glycine catabolic process; Located in mitochondrion, glycine cleavage complex; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Single hybrid motif (InterPro-IPR011053), Glycine cleavage H-protein (InterPro-IPR002930); Has 205 Blast hits to 205 proteins in 102 species- Archae - 6; Bacteria - 8; Metazoa - 118; Fungi - 2; Plants - 34; Viruses - 0; Other Eukaryotes - 37 (source- NCBI BLink) (225 aa)
       
      0.878
AT1G63810
Uncharacterized protein At1g63810; Contains the following InterPro domains- Nrap protein (InterPro-IPR005554); Has 396 Blast hits to 382 proteins in 182 species- Archae - 3; Bacteria - 2; Metazoa - 142; Fungi - 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60 (source- NCBI BLink) (1053 aa)
     
        0.867
AT1G34150
Pseudouridine synthase family protein; Its function is described as pseudouridine synthase activity; Involved in pseudouridine synthesis, RNA modification; Located in cellular_component unknown; Expressed in 21 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Pseudouridine synthase, catalytic domain (InterPro-IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro-IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro-IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro-IPR020095), Pseudouridine synthase [...] (446 aa)
   
   
  0.797
NRPA2
DNA-directed RNA polymerase I subunit 2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase I which synthesizes ribosomal RNA precursors. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol I is composed of mobile elements and NRPA2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft (1178 aa)
     
        0.777
AT3G21540
Transducin family protein / WD-40 repeat family protein; Its function is described as nucleotide binding; Located in nucleolus, heterotrimeric G-protein complex; Expressed in 20 plant structures; Expressed during 10 growth stages; Contains the following InterPro domains- WD40 repeat 2 (InterPro-IPR019782), WD40 repeat, conserved site (InterPro-IPR019775), WD40 repeat (InterPro-IPR001680), Small-subunit processome, Utp12 (InterPro-IPR007148), G-protein beta WD-40 repeat, region (InterPro-IPR020472), WD40 repeat-like-containing domain (InterPro-IPR011046), WD40-repeat-containing domain ( [...] (955 aa)
     
        0.707
DIM1B
Ribosomal RNA small subunit methyltransferase, mitochondrial; N6-adenine methyltransferase which modifies the AA dinucleotide at the plant mitochondrial 18S rRNA nucleotides A1914 and A1915. Not active as mitochondrial transcription factor (380 aa)
   
   
  0.678
DIM1A
Ribosomal RNA adenine dimethylase family protein; N6-adenine methyltransferase which modifies the AA dinucleotide at the plant nuclear 18S rRNA nucleotides A1785 and A1786. Required for generating appropriate patterns of gene expression during root development, including the cell-specific expression of transcriptional regulators involved in root hair and non-hair cells patterning (353 aa)
   
   
  0.678
PFC1
Ribosomal RNA small subunit methyltransferase, chloroplastic; Required for methylation of the 3’ adenosines in the small subunit of plastid rRNA. Essential for chloroplast biogenesis at low temperatures (343 aa)
   
   
  0.678
AT1G74240
Mitochondrial substrate carrier family protein; Its function is described as binding; Involved in transport, mitochondrial transport, transmembrane transport; Located in mitochondrial inner membrane, membrane; Expressed in 11 plant structures; Expressed during 6 growth stages; Contains the following InterPro domains- Mitochondrial carrier protein (InterPro-IPR002067), Mitochondrial substrate carrier (InterPro-IPR001993), Mitochondrial substrate/solute carrier (InterPro-IPR018108); BEST Arabidopsis thaliana protein match is- S-adenosylmethionine carrier 1 (TAIR-AT4G39460.2); Has 26278 B [...] (364 aa)
     
        0.652
AT3G04820
Pseudouridine synthase family protein; Its function is described as pseudouridine synthase activity; Involved in pseudouridine synthesis, RNA modification; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Pseudouridine synthase, catalytic domain (InterPro-IPR020103), Pseudouridine synthase, TruD (InterPro-IPR001656), Pseudouridine synthase TruD, eukaryotic (InterPro-IPR017091), Pseudouridine synthase, TruD, insertion domain (InterPro-IPR011760); Has 2276 Blast hits to 2198 proteins in 933 species- Archae - 260; Bacteria - 126 [...] (715 aa)
     
   
  0.650
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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