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AT1G20410 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G20410" - Pseudouridine synthase family protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G20410Pseudouridine synthase family protein (504 aa)    
Predicted Functional Partners:
AT1G75980
Single hybrid motif superfamily protein (225 aa)
     
      0.969
NAP57
Homologue of NAP57; Plays a central role in ribosomal RNA processing. Probable catalytic subunit of H/ACA small nucleolar ribonucleoprotein (H/ACA snoRNP) complex, which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine (’psi’) residues may serve to stabilize the conformation of rRNAs (By similarity) (565 aa)
   
   
  0.603
AT1G09800
tRNA pseudouridine synthase A (372 aa)
     
   
  0.581
AT1G20370
Pseudouridine synthase-like protein (549 aa)
     
   
  0.574
AT2G25100
Ribonuclease H2 subunit A; Catalytic subunit of RNase HII, an endonuclease that specifically degrades the RNA of RNA-DNA hybrids. Participates in DNA replication, possibly by mediating the removal of lagging- strand Okazaki fragment RNA primers during DNA replication. Mediates the excision of single ribonucleotides from DNA-RNA duplexes (By similarity) (296 aa)
   
        0.569
AT1G48900
Signal recognition particle subunit SRP54; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein) (495 aa)
   
        0.556
CER7
ECERIFERUM 7; Probable 3’->5’ exoribonuclease involved in the regulation of cuticular wax biosynthesis by controlling the expression of CER3. May act by degrading a specific mRNA species encoding a negative regulator of CER3 transcription. Can perform exosomal functions and complement the yeast rrp45 null mutant (438 aa)
   
        0.555
AT3G04820
Pseudouridine synthase (715 aa)
     
   
  0.552
AT5G35400
Pseudouridine synthase family protein (471 aa)
     
   
  0.548
AT1G76120
Pseudouridine synthase-like protein (463 aa)
     
   
  0.533
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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