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AT1G20540 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G20540" - transducin/WD-40 repeat-containing protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
AT1G20540transducin/WD-40 repeat-containing protein (351 aa)    
Predicted Functional Partners:
MOS1
MODIFIER OF snc1; Involved in the regulation of the chromatin structure and DNA methylation at the SNC1 locus. Regulates the expression of SNC1 at chromatin level (1427 aa)
           
  0.863
AT4G02030
Vps51/Vps67 family (components of vesicular transport) protein (805 aa)
     
 
  0.780
VPS54
Protein VPS54; Acts as component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). The GARP complex facilitates tethering as well as SNARE complex assembly at the Golgi (By similarity). Probably involved in pollen tube elongation and other polar growth (1034 aa)
       
 
  0.670
AT2G27900
Uncharacterized protein (1124 aa)
     
      0.662
AT1G71300
Vps52 / Sac2 family ; May be involved in retrograde transport of early and late endosomes to the late Golgi (721 aa)
     
 
  0.644
POK
POKY POLLEN TUBE; Acts as component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). The GARP complex facilitates tethering as well as SNARE complex assembly at the Golgi (By similarity). Required for pollen tube elongation and other polar growth (707 aa)
     
 
  0.644
IDA
Protein IDA; Involved in an ethylene-independent separation step of floral abscission. May act with RLK5 and HSL2 as ligand-receptor pairs (77 aa)
           
  0.638
AT1G50970
Membrane trafficking VPS53-like protein; Involved in retrograde transport from early and late endosomes to late Golgi, leading to the membrane fusion between late Golgi and endosomal vesicles (569 aa)
       
 
  0.632
HIT1
HEAT-INTOLERANT 1; Acts as component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). The GARP complex facilitates tethering as well as SNARE complex assembly at the Golgi (By similarity). Required for vesicle trafficking involved in plasma membrane protein composition. Probably involved in pollen tube elongation and other polar growth. Confers basal tolerance to long-term heat stress and osmotic stress, by acclimation of the plasma membrane (847 aa)
       
 
  0.632
DCAF1
DDB1-CUL4 associated factor 1; Component of the CUL4-RBX1-DDB1-DCAF1 E3 ubiquitin- protein ligase complex, DCAF1 may function as the substrate recognition module within this complex. Appears to be required for plant embryogenesis and to affect several other developmental processes including leaf, shoot, and flower development (1883 aa)
       
      0.561
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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