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AT1G20540 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G20540" - Transducin/WD40 repeat-like superfamily protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G20540Transducin/WD40 repeat-like superfamily protein; Contains the following InterPro domains- WD40 repeat 2 (InterPro-IPR019782), WD40 repeat-like-containing domain (InterPro-IPR011046), WD40-repeat-containing domain (InterPro-IPR017986), WD40/YVTN repeat-like-containing domain (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680), WD40 repeat, subgroup (InterPro-IPR019781); BEST Arabidopsis thaliana protein match is- DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2 (TAIR-AT1G76260.1); Has 8926 Blast hits to 7393 proteins in 418 species- Archae - 0; Bacteria - 876; Metazoa - 3687; [...] (351 aa)    
Predicted Functional Partners:
AT4G02030
Vps51/Vps67 family (components of vesicular transport) protein; Acts as component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). The GARP complex is required for the maintenance of protein retrieval from endosomes to the TGN, acid hydrolase sorting, lysosome function, endosomal cholesterol traffic and autophagy. VPS51 participates in retrograde transport of acid hydrolase receptors, likely by promoting tethering and SNARE-dependent fusion of endosome-derived carriers to the TGN. Acts as component of the EARP [...] (805 aa)
     
 
  0.937
AT2G27900
Uncharacterized protein At2g27890-At2g27900-At2g27910; Contains the following InterPro domains- Protein of unknown function DUF2451, C-terminal (InterPro-IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro-IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (1124 aa)
     
 
  0.927
VPS54
Vacuolar protein sorting-associated protein 54, chloroplastic; Acts as component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). The GARP complex facilitates tethering as well as SNARE complex assembly at the Golgi (By similarity). Probably involved in pollen tube elongation and other polar growth; Belongs to the VPS54 family (1034 aa)
       
 
  0.905
AT1G50970
Vacuolar protein sorting-associated protein 53 B; Involved in retrograde transport from early and late endosomes to late Golgi, leading to the membrane fusion between late Golgi and endosomal vesicles; Belongs to the VPS53 family (569 aa)
     
 
  0.752
HIT1
Vacuolar protein sorting-associated protein 53 A; Acts as component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). The GARP complex facilitates tethering as well as SNARE complex assembly at the Golgi (By similarity). Required for vesicle trafficking involved in plasma membrane protein composition. Probably involved in pollen tube elongation and other polar growth. Confers basal tolerance to long-term heat stress and osmotic stress, by acclimation of the plasma membrane; Belongs to the VPS53 family (847 aa)
     
 
  0.752
DCAF1
DDB1- and CUL4-associated factor homolog 1; Component of the CUL4-RBX1-DDB1-DCAF1 E3 ubiquitin- protein ligase complex, DCAF1 may function as the substrate recognition module within this complex. Appears to be required for plant embryogenesis and to affect several other developmental processes including leaf, shoot, and flower development; Belongs to the VPRBP/DCAF1 family (1883 aa)
       
      0.655
AT4G39820
Tetratricopeptide repeat (TPR)-like superfamily protein; Its function is described as binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Tetratricopeptide-like helical (InterPro-IPR011990), Tetratricopeptide repeat-containing (InterPro-IPR013026); Has 285 Blast hits to 281 proteins in 117 species- Archae - 4; Bacteria - 22; Metazoa - 124; Fungi - 26; Plants - 36; Viruses - 0; Other Eukaryotes - 73 (source- NCBI BLink) (408 aa)
           
  0.632
AT5G06360
Ribosomal protein S8e family protein; Contains the following InterPro domains- Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro-IPR022309); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (260 aa)
           
  0.586
ZEU1
P-loop containing nucleoside triphosphate hydrolases superfamily protein; Encodes thymidylate kinase which exists in two isoforms in plants. The longer variant of 263 amino acids with a N-terminal extension that is required for localization to the mitochondrion. The second isoform of 224 residues is localized to the cytoplasm and nucleoplasm. Peak of expression occurs during G1/S phase transition (271 aa)
           
  0.572
AT1G71300
Vacuolar protein sorting-associated protein 52 B; May be involved in retrograde transport of early and late endosomes to the late Golgi; Belongs to the VPS52 family (721 aa)
     
 
  0.544
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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