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AT1G20580 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G20580" - Small nuclear ribonucleoprotein-like protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G20580Small nuclear ribonucleoprotein-like protein; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome (By similarity). May play a major role in the splicing of cellular pre-mRNAs. Required for normal plant development (PubMed-21421416) (131 aa)    
Predicted Functional Partners:
SNRNP-G
Small nuclear ribonucleoprotein; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (80 aa)
     
  0.999
AT4G30330
Small nuclear ribonucleoprotein E (88 aa)
     
  0.999
AT2G18740
Putative small nuclear ribonucleoprotein (88 aa)
     
  0.999
RUXF
Small nuclear ribonucleoprotein F; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (96 aa)
     
  0.998
LSM2
SM-like 2; Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5’-3’ mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splicing of selected development-related mR [...] (93 aa)
     
  0.998
AT2G47640
Small nuclear ribonucleoprotein D2 (109 aa)
     
  0.998
AT3G11500
Small nuclear ribonucleoprotein G (79 aa)
     
  0.998
EMB2816
EMBRYO DEFECTIVE 2816; Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5’-3’ mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splicing of selected developmen [...] (99 aa)
     
  0.998
AT3G07590
Small nuclear ribonucleoprotein D1 (114 aa)
     
0.998
AT4G02840
Small nuclear ribonucleoprotein family protein (126 aa)
     
0.998
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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