AT1G20720 protein (Arabidopsis thaliana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AT1G20720

RAD3-like DNA-binding helicase protein (1175 aa)

Predicted Functional Partners:

AT4G17020

0.918

AT4G30820

0.916

AT4G24440

0.898

AT1G18340

0.883

AT4G21010

0.852

AT4G20330

0.852

AT4G20340

0.846

AT1G62886

0.839

AT1G12400

0.839

AT4G20810

0.837

Your Current Organism:

Arabidopsis thaliana

NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AT1G12400	AT1G18340	AT1G12400.1	AT1G18340.1	Nucleotide excision repair, TFIIH, subunit TTDA; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	Transcription initiation factor TFIIH subunit H3; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	0.973
AT1G12400	AT1G20720	AT1G12400.1	AT1G20720.1	Nucleotide excision repair, TFIIH, subunit TTDA; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	RAD3-like DNA-binding helicase protein	0.839
AT1G12400	AT1G62886	AT1G12400.1	AT1G62886.1	Nucleotide excision repair, TFIIH, subunit TTDA; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	Nucleotide excision repair, TFIIH, subunit TTDA	0.800
AT1G12400	AT4G17020	AT1G12400.1	AT4G17020.3	Nucleotide excision repair, TFIIH, subunit TTDA; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	Transcription factor-related; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	0.984
AT1G12400	AT4G20330	AT1G12400.1	AT4G20330.1	Nucleotide excision repair, TFIIH, subunit TTDA; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	Transcription initiation factor TFIIE, beta subunit; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase	0.951
AT1G12400	AT4G20340	AT1G12400.1	AT4G20340.1	Nucleotide excision repair, TFIIH, subunit TTDA; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	Transcription factor TFIIE, alpha subunit	0.937
AT1G12400	AT4G20810	AT1G12400.1	AT4G20810.1	Nucleotide excision repair, TFIIH, subunit TTDA; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	Transcription initiation factor IIE (TFIIE) alpha subunit protein	0.937
AT1G12400	AT4G21010	AT1G12400.1	AT4G21010.1	Nucleotide excision repair, TFIIH, subunit TTDA; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	Transcription initiation factor TFIIE, beta subunit; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase	0.951
AT1G12400	AT4G24440	AT1G12400.1	AT4G24440.1	Nucleotide excision repair, TFIIH, subunit TTDA; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation. TFIIA in a complex with TBP mediates transcriptional activity (By similarity)	0.957
AT1G18340	AT1G12400	AT1G18340.1	AT1G12400.1	Transcription initiation factor TFIIH subunit H3; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	Nucleotide excision repair, TFIIH, subunit TTDA; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	0.973
AT1G18340	AT1G20720	AT1G18340.1	AT1G20720.1	Transcription initiation factor TFIIH subunit H3; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	RAD3-like DNA-binding helicase protein	0.883
AT1G18340	AT1G62886	AT1G18340.1	AT1G62886.1	Transcription initiation factor TFIIH subunit H3; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	Nucleotide excision repair, TFIIH, subunit TTDA	0.960
AT1G18340	AT4G17020	AT1G18340.1	AT4G17020.3	Transcription initiation factor TFIIH subunit H3; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	Transcription factor-related; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	0.997
AT1G18340	AT4G20330	AT1G18340.1	AT4G20330.1	Transcription initiation factor TFIIH subunit H3; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	Transcription initiation factor TFIIE, beta subunit; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase	0.954
AT1G18340	AT4G20340	AT1G18340.1	AT4G20340.1	Transcription initiation factor TFIIH subunit H3; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	Transcription factor TFIIE, alpha subunit	0.945
AT1G18340	AT4G20810	AT1G18340.1	AT4G20810.1	Transcription initiation factor TFIIH subunit H3; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	Transcription initiation factor IIE (TFIIE) alpha subunit protein	0.945
AT1G18340	AT4G21010	AT1G18340.1	AT4G21010.1	Transcription initiation factor TFIIH subunit H3; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	Transcription initiation factor TFIIE, beta subunit; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase	0.954
AT1G18340	AT4G24440	AT1G18340.1	AT4G24440.1	Transcription initiation factor TFIIH subunit H3; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation. TFIIA in a complex with TBP mediates transcriptional activity (By similarity)	0.983
AT1G18340	AT4G30820	AT1G18340.1	AT4G30820.1	Transcription initiation factor TFIIH subunit H3; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	CDK-activating kinase assembly factor MAT1	0.996
AT1G20720	AT1G12400	AT1G20720.1	AT1G12400.1	RAD3-like DNA-binding helicase protein	Nucleotide excision repair, TFIIH, subunit TTDA; Component of the general transcription and DNA repair factor IIH (TFIIH) core, which is essential for both basal and activated transcription, and is involved in nucleotide excision repair (NER) of damaged DNA	0.839

page 1 of 6

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2018

Credits

Access

Info

About