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STRINGSTRING
AT1G20770 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G20770" - Unknown protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G20770Unknown protein; Has 59 Blast hits to 59 proteins in 24 species- Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (215 aa)    
Predicted Functional Partners:
AT2G31710
Vacuolar ATPase assembly integral membrane protein VMA21-like domain; Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum (105 aa)
           
  0.968
AT3G05150
Major facilitator superfamily protein; Sugar transporter (470 aa)
           
  0.951
AT2G48020
Major facilitator superfamily protein; Sugar transporter (463 aa)
           
  0.861
AT1G19450
Major facilitator superfamily protein; Sugar transporter (488 aa)
           
  0.861
COPT5
Encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast; Belongs to the copper transporter (Ctr) (TC 1.A.56) family. SLC31A subfamily (146 aa)
           
  0.769
SPX4
SPX domain gene 4 (SPX4); Contains the following InterPro domains- SPX, N-terminal (InterPro-IPR004331); BEST Arabidopsis thaliana protein match is- SPX domain gene 1 (TAIR-AT5G20150.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (318 aa)
       
      0.762
AT4G24840
Oligomeric golgi complex subunit-like protein; Its function is described as molecular_function unknown; Involved in protein transport, Golgi organization; Located in vacuole; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- COG complex component, COG2 (InterPro-IPR009316); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (756 aa)
       
      0.762
AT3G06530
Uncharacterized protein At3g06530; Involved in nucleolar processing of pre-18S ribosomal RNA. Involved in ribosome biosynthesis (By similarity) (2199 aa)
       
      0.762
HUB1
E3 ubiquitin-protein ligase BRE1-like 1; E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6. Required for the regulation of flowering time and defense against necrotrophic fungal pathogens. Involved in the control of seed dormancy and germination; Belongs to the BRE1 family (878 aa)
       
      0.762
MAP70-2
Microtubule-associated proteins 70-2; Plant-specific protein that interact with microtubules (634 aa)
       
      0.762
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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