• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G20880 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G20880" - RNA-binding (RRM/RBD/RNP motifs) family protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G20880RNA-binding (RRM/RBD/RNP motifs) family protein; Its function is described as RNA binding, nucleotide binding, nucleic acid binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- RNA recognition motif, RNP-1 (InterPro-IPR000504), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677); BEST Arabidopsis thaliana protein match is- RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR-AT1G76460.1); Has 7701 Blast hits to 7638 proteins in 709 spec [...] (274 aa)    
Predicted Functional Partners:
AT3G16990
Haem oxygenase-like, multi-helical; Involved in thiamine salvage by hydrolyzing the thiamine breakdown product 4-amino-5-aminomethyl-2-methylpyrimidine (amino- HMP) to 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP). Has a high formylamino-HMP amidohydrolase activity. No activity with other thiamine degradation products such as thiamine mono- or diphosphate, oxothiamine, oxythiamine, thiamine disulfide, desthiothiamine or thiochrome as substrates. Does not display thiaminase II activity, as it is unable to hydrolyze thiamine. Is able to carry out two successive steps in the salvage of [...] (221 aa)
           
  0.899
RBP-DR1
RNA-binding protein-defense related 1; RNA-binding protein involved in the regulation of flowering time. Acts as repressor of the activity of SOC1, a transcriptional activator of flowering time. Binds to the 3’-UTR of SOC1 mRNA in the cytoplasm and participates in SOC1 mRNA decay, mediated by the distal region of the SOC1 3’-UTR. Acts as positive regulator of salicylic acid (SA)-mediated immunity. May act on SA signaling-related genes at a post-transcriptional level (441 aa)
       
 
  0.787
AT4G14342
Splicing factor 3B subunit 5/RDS3 complex subunit 10; Contains the following InterPro domains- Splicing factor 3B subunit 5/RDS3 complex subunit 10 (InterPro-IPR009846), Splicing factor 3B, subunit 5 (InterPro-IPR017089); BEST Arabidopsis thaliana protein match is- Splicing factor 3B subunit 5/RDS3 complex subunit 10 (TAIR-AT3G23325.1); Has 333 Blast hits to 333 proteins in 170 species- Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 97; Plants - 62; Viruses - 0; Other Eukaryotes - 53 (source- NCBI BLink); Belongs to the SF3B5 family (87 aa)
           
  0.699
AtLEA4-1
Late embryogenesis abundant protein, group 1 protein; Involved dehydration tolerance. Involved in the adaptive response of vascular plants to withstand water deficit. May possess chaperone-like activity under water deficit (By similarity) (134 aa)
           
  0.699
AT3G60540
Preprotein translocase Sec, Sec61-beta subunit protein; Necessary for protein translocation in the endoplasmic reticulum (81 aa)
           
  0.697
IRE1A
Serine/threonine-protein kinase/endoribonuclease IRE1a; Senses unfolded proteins in the lumen of the endoplasmic reticulum via its N-terminal domain which leads to enzyme auto- activation. The active endoribonuclease domain splices bZIP60 mRNA to generate a new C-terminus, converting it into a potent unfolded-protein response transcriptional activator which then induces transcription of UPR target genes. Involved in organ growth regulation. Plays a role in plant immunity and abiotic stress responses; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family (841 aa)
     
   
  0.655
AT4G24920
Protein transport protein Sec61 subunit gamma-1; Necessary for protein translocation in the endoplasmic reticulum (69 aa)
           
  0.566
SC35
Serine/arginine-rich splicing factor SC35; Probably involved in intron recognition and spliceosome assembly, but not involved in alternative splicing regulation of the SCL33 intron (303 aa)
   
     
  0.560
PAB7
Polyadenylate-binding protein 7; Binds the poly(A) tail of mRNA. Appears to be an important mediator of the multiple roles of the poly(A) tail in mRNA biogenesis, stability and translation (By similarity); Belongs to the polyadenylate-binding protein type-1 family (609 aa)
           
  0.560
Fes1A
Uncharacterized protein At3g09350; Encodes one of the Arabidopsis orthologs of the human Hsp70-binding protein 1 (HspBP-1) and yeast Fes1p- Fes1A (AT3G09350), Fes1B (AT3G53800), Fes1C (AT5G02150). Fes1A is cytosolic and associates with cytosolic Hsp70. Mutants showed increased heat-sensitive phenotype suggestion the involvement of Fes1A in acquired thermotolerance. Does not have nucleotide exchange factor activity in vitro (363 aa)
           
  0.553
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (9%) [HD]