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AT1G20880 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G20880" - RNA recognition motif-containing protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G20880RNA recognition motif-containing protein (274 aa)    
Predicted Functional Partners:
AT4G14342
Splicing factor 3B subunit 5 (87 aa)
           
  0.912
AT3G16990
Haem oxygenase-like, multi-helical; Involved in thiamine salvage by hydrolyzing the thiamine breakdown product 4-amino-5-aminomethyl-2-methylpyrimidine (amino- HMP) to 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP) (PubMed-25014715). Has a high formylamino-HMP amidohydrolase activity (PubMed-25014715). No activity with other thiamine degradation products such as thiamine mono- or diphosphate, oxothiamine, oxythiamine, thiamine disulfide, desthiothiamine or thiochrome as substrates (PubMed-25014715). Does not display thiaminase II activity, as it is unable to hydrolyze thiamine (PubMe [...] (221 aa)
           
  0.864
PAB7
poly(A) binding protein 7; Binds the poly(A) tail of mRNA. Appears to be an important mediator of the multiple roles of the poly(A) tail in mRNA biogenesis, stability and translation (By similarity) (609 aa)
           
  0.775
SC35
Ortholog of human splicing factor SC35; Probably involved in intron recognition and spliceosome assembly, but not involved in alternative splicing regulation of the SCL33 intron (303 aa)
   
     
  0.758
AT3G60540
Preprotein translocase Sec, Sec61-beta subunit protein (81 aa)
           
  0.738
AtLEA4-1
Late Embryogenesis Abundant 4-1 (134 aa)
           
  0.733
AT2G34590
Transketolase family protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components- pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity) (406 aa)
           
  0.732
RBP-DR1
RNA-binding protein-defense related 1; RNA-binding protein involved in the regulation of flowering time. Acts as repressor of the activity of SOC1, a transcriptional activator of flowering time. Binds to the 3’-UTR of SOC1 mRNA in the cytoplasm and participates in SOC1 mRNA decay, mediated by the distal region of the SOC1 3’-UTR (PubMed-23437850). Acts as positive regulator of salicylic acid (SA)-mediated immunity. May act on SA signaling-related genes at a post-transcriptional level (PubMed-20636102) (441 aa)
       
 
  0.708
U2AF35B
Splicing factor U2af small subunit B; Necessary for the splicing of pre-mRNA (By similarity). Probably active at the 3’ splice sites (283 aa)
           
  0.675
BGLU11
Beta glucosidase 11 (521 aa)
           
  0.670
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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