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STRINGSTRING
SCL1 protein (Arabidopsis thaliana) - STRING interaction network
"SCL1" - Encodes a scarecrow-like protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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SCL1Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family (593 aa)    
Predicted Functional Partners:
HD1
Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organi [...] (501 aa)
       
      0.765
AT1G55290
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; 2-oxoglutarate (OG)- and Fe(II)-dependent dioxygenase (2OGD)involved in scopoletin biosynthesis. Converts feruloyl CoA into 6’-hydroxyferuloyl CoA but has no activity with ferulic acid, feruloylquinic acid, caffeic acid, caffeoyl CoA, p-coumaric acid, cinnamic acid, cinnamoyl CoA or benzoyl CoA; Belongs to the iron/ascorbate-dependent oxidoreductase family (361 aa)
           
  0.644
AT4G02725
Spindle pole body-associated protein; Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast, membrane; Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (165 aa)
           
  0.642
AT5G53990
UDP-Glycosyltransferase superfamily protein; Its function is described as transferase activity, transferring glycosyl groups; Involved in metabolic process; Expressed in root; Contains the following InterPro domains- UDP-glucuronosyl/UDP-glucosyltransferase (InterPro-IPR002213); BEST Arabidopsis thaliana protein match is- UDP-Glycosyltransferase superfamily protein (TAIR-AT1G64910.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (447 aa)
           
  0.641
BPC1
Protein BASIC PENTACYSTEINE1; Transcriptional regulator that specifically binds to GA- rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes; Belongs to the BBR/BPC family (283 aa)
           
  0.637
BPC3
Protein BASIC PENTACYSTEINE3; Transcriptional regulator that specifically binds to GA- rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes (270 aa)
           
  0.637
BPC2
Protein BASIC PENTACYSTEINE2; Transcriptional regulator that specifically binds to GA- rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes (279 aa)
           
  0.637
E2F1
Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. Binds DPA and RBR1 proteins. Expressed throughout the cell cycle. Abundance increased by auxin through stabilization of the protein. Elevates CDK levels and activity, even under hormone-free conditions. Promotes cell division and shortens cell doubling time, inhibits cell growth. Transgenic plants overexpressing AtE2Fa contained an increased level of AtE2Fb transcripts that is paralleled by an increase in the amount of the AtE2Fb protein, suggesting that AtE2Fb expres [...] (469 aa)
           
  0.634
E2F3
Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway (514 aa)
           
  0.634
MYB17
Transcription factor MYB41; Transcription factor that may play a role in flower development by repressing ANT. Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (299 aa)
           
  0.588
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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