STRINGSTRING
SCL1 protein (Arabidopsis thaliana) - STRING interaction network
"SCL1" - SCARECROW-like 1 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL1SCARECROW-like 1; Probable transcription factor involved in plant development (593 aa)    
Predicted Functional Partners:
HD1
Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. HDA19 is involved in jasmonic acid and ethylene signaling of pathogen response. Part of a repressor complex including APETALA2 (AP2) and TOPLESS (TPL) that control the expression domains of numerous floral [...] (501 aa)
       
      0.746
AT5G53990
UDP-glycosyltransferase-like protein (447 aa)
           
  0.709
AT3G18620
Putative S-acyltransferase; S-acyltransferase involved in protein lipid modification (345 aa)
           
  0.634
ATN1
Protein kinase family protein (356 aa)
     
   
  0.538
MEE69
MATERNAL EFFECT EMBRYO ARREST 69 (136 aa)
           
  0.477
BPC1
Basic pentacysteine1; Transcriptional regulator that specifically binds to GA- rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes (283 aa)
           
  0.468
BPC2
Basic pentacysteine 2; Transcriptional regulator that specifically binds to GA- rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes (279 aa)
           
  0.468
ckl8
Casein kinase I-like 8 (480 aa)
     
   
  0.464
AT1G67310
Calmodulin-binding transcription activator 4; Regulates transcriptional activity in response to calcium signals. Binds to the consensus sequence 5’- [ACG]CGCG[GTC]-3’ (1016 aa)
     
   
  0.451
MYB67
Myb domain protein 67 (307 aa)
           
  0.449
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (11%) [HD]