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AT1G21520 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G21520" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G21520Uncharacterized protein (66 aa)    
Predicted Functional Partners:
AT5G15240
Transmembrane amino acid transporter family protein (423 aa)
           
  0.862
AT3G50090
Exonuclease family protein; Putative 3’-5’ exonuclease degrading single-stranded small RNAs (322 aa)
           
  0.808
AT2G39130
Transmembrane amino acid transporter-like protein (550 aa)
           
  0.670
AT3G48200
Uncharacterized protein (1088 aa)
           
  0.603
PRA1.F1
PRA1 family protein F1; May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments (180 aa)
           
  0.603
AT1G12630
Ethylene-responsive transcription factor ERF027; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity) (192 aa)
           
  0.603
HTB4
Histone H2B; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (150 aa)
           
  0.558
AT3G60490
Ethylene-responsive transcription factor ERF035; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity) (256 aa)
           
  0.557
FRS12
FAR1-related sequence 12; Putative transcription activator involved in regulating light control of development (788 aa)
           
  0.553
Cpn60beta4
Chaperonin-60beta4; Involved specifically in the folding of NDHH, a subunit of the chloroplast NADH dehydrogenase-like complex (NDH) (611 aa)
           
  0.552
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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