• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G21540 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G21540" - AMP-dependent synthetase and ligase family protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G21540AMP-dependent synthetase and ligase family protein; May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs (550 aa)    
Predicted Functional Partners:
AT4G33355
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members- At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15 (119 aa)
           
  0.783
HVA22J
HVA22-like protein J (HVA22J); Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Expressed in 10 plant structures; Expressed during L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Contains the following InterPro domains- TB2/DP1/HVA22 related protein (InterPro-IPR004345); BEST Arabidopsis thaliana protein match is- Abscisic acid-responsive (TB2/DP1, HVA22) family protein (TAIR-AT5G42560.1); Has 1423 Blast hits to 1423 proteins in 191 [...] (258 aa)
           
  0.770
AT1G11590
Plant invertase/pectin methylesterase inhibitor superfamily; Acts in the modification of cell walls via demethylesterification of cell wall pectin; In the C-terminal section; belongs to the pectinesterase family (524 aa)
           
  0.761
EXPA23
Expansin-A23; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity) (259 aa)
           
  0.715
MCT2
A member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only (294 aa)
           
  0.710
EXO70H6
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree (615 aa)
     
   
  0.704
PUM12
Pumilio homolog 12; Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3’ UTR of target mRNA transcripts (596 aa)
     
   
  0.700
AT4G14730
Bax inhibitor-1 family protein; (Microbial infection) Facilitates the development of the powdery mildew fungus E.cruciferarum. May prevent cell death upon A.alternata f.sp. lycopersici (AAL) toxin treatment (235 aa)
     
   
  0.700
ACHT3
Atypical CYS HIS rich thioredoxin 3; Probable thiol-disulfide oxidoreductase that may participate in various redox reactions (273 aa)
           
  0.696
AT3G45880
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Involved in phospholipid biosynthetic process; Located in cellular_component unknown; Expressed in shoot apex, root, seed; Expressed during E expanded cotyledon stage; Contains the following InterPro domains- Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro-IPR003347); BEST Arabidopsis thaliana protein match is- 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR-AT5G19840.2); Has 1138 Blast hits to 1132 proteins in 270 species- Archae - 0; Bacteria - 266; Metazoa - 428; F [...] (345 aa)
           
  0.677
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (18%) [HD]