STRINGSTRING
AT1G21560 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G21560" - Uncharacterized protein in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G21560Uncharacterized protein (399 aa)    
Predicted Functional Partners:
AT1G21550
Calcium-binding EF-hand family protein; Potential calcium sensor (155 aa)
           
  0.867
EIF4B2
Eukaryotic initiation factor 4B2; Promotes the eIF4F and eIF4A RNA-dependent ATP- hydrolysis activity with different efficiency depending on mRNAs, thus providing mRNA discrimination during initiation of translation (549 aa)
           
  0.750
EIF4B1
Eukaryotic translation initiation factor 4B1; Promotes the eIF4F and eIF4A RNA-dependent ATP- hydrolysis activity with different efficiency depending on mRNAs, thus providing mRNA discrimination during initiation of translation (532 aa)
     
   
  0.749
ING1
INHIBITOR OF GROWTH 1; Histone-binding component that specifically recognizes H3 tails trimethylated on ’Lys-4’ (H3K4me3), which mark transcription start sites of virtually all active genes (234 aa)
           
  0.670
AT3G03960
TCP-1/cpn60 chaperonin family protein; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. Contributes to stem cell maintenance through its impact on transcription factors trafficking through plasmodesmata (PubMed-21868675). Probably involved in refolding translocated, partially unfolded proteins, including viral movement proteins (PubMed-21868675, PubMed-22476462) (549 aa)
     
   
  0.645
FBR12
FUMONISIN B1-RESISTANT12; The precise role of eIF-5A in protein biosynthesis is not known but it may function as a bimodular protein capable of binding to both RNA and proteins. Regulates cytokinin-mediated root protoxylem specification and represses secifically the expression of AHP6. Regulates the induction of programmed cell death caused by infection with virulent pathogen (159 aa)
           
  0.635
LATE
LATE FLOWERING; Acts as a transcriptional repressor. Prevents the photoperiodic and circadian clock-dependent transition to flowering in long days (LD) by repressing the expression of flowering time genes (e.g. FT, GI and CO) in the leaf vasculature, and by interfering with floral meristem identity genes at the apex (e.g. SOC1 and LFY) (173 aa)
           
  0.601
CHR40
Chromatin remodeling 40; Probable chromatin remodeling factor (1132 aa)
     
   
  0.599
ROC3
Rotamase CYP 3; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Involved in reactive oxygen species production in response to pathogen infection (173 aa)
           
  0.559
VAD1
GRAM domain family protein; Involved in ethylene- and salicylic acid-dependent cell death control associated with cells in the vicinity of vascular bundles (598 aa)
           
  0.557
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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