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AT1G21680 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G21680" - DPP6 N-terminal domain-like protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G21680DPP6 N-terminal domain-like protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in plasma membrane, vacuole, plant-type cell wall; Expressed in 25 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- WD40-like Beta Propeller (InterPro-IPR011659), Six-bladed beta-propeller, TolB-like (InterPro-IPR011042); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G21670.1); Has 9463 Blast hits to 5353 proteins in 1263 species- Archae - 75; Bacteria - 6165; Metazoa - 47; Fungi [...] (706 aa)    
Predicted Functional Partners:
AT3G06130
Heavy metal transport/detoxification superfamily protein; Heavy-metal-binding protein (473 aa)
           
  0.968
AT4G17520
RGG repeats nuclear RNA binding protein B; Binds RNA (360 aa)
           
  0.967
TWN2
valyl-tRNA synthetase / valine--tRNA ligase (VALRS); Required for embryo development and seed viability (1108 aa)
         
  0.863
AT5G26830
Threonine--tRNA ligase, mitochondrial 1; Encodes a dual-targeted threonyl-tRNA synthetase found in both the chloroplast and mitochondrion (709 aa)
   
   
  0.596
AT5G35530
Ribosomal protein S3 family protein; Its function is described as structural constituent of ribosome; Involved in response to salt stress, translation; Located in cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane; Expressed in 23 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- K Homology, prokaryotic type (InterPro-IPR009019), K Homology, type 2 (InterPro-IPR004044), K Homology (InterPro-IPR004087), Ribosomal protein S3, C-terminal (InterPro-IPR001351), Ribosomal protein S3, eukaryotic/archaeal (InterPro-IPR005703); [...] (248 aa)
     
   
  0.531
AT3G53870
Ribosomal protein S3 family protein; Its function is described as structural constituent of ribosome, RNA binding; Involved in response to salt stress, translation; Located in cytosolic small ribosomal subunit, cytosolic ribosome, membrane; Expressed in root, leaf; Contains the following InterPro domains- K Homology, prokaryotic type (InterPro-IPR009019), K Homology, type 2 (InterPro-IPR004044), K Homology (InterPro-IPR004087), Ribosomal protein S3, C-terminal (InterPro-IPR001351), Ribosomal protein S3, eukaryotic/archaeal (InterPro-IPR005703); BEST Arabidopsis thaliana protein match i [...] (249 aa)
     
   
  0.530
FOP1
O-acyltransferase (WSD1-like) family protein; Contains the following InterPro domains- O-acyltransferase, WSD1, C-terminal (InterPro-IPR009721), O-acyltransferase, WSD1, N-terminal (InterPro-IPR004255); BEST Arabidopsis thaliana protein match is- O-acyltransferase (WSD1-like) family protein (TAIR-AT2G38995.2); Has 1220 Blast hits to 1207 proteins in 180 species- Archae - 4; Bacteria - 957; Metazoa - 16; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 19 (source- NCBI BLink) (486 aa)
           
  0.530
GRF4
Growth-regulating factor 4; Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation (380 aa)
           
  0.526
AtMg00090
Structural constituent of ribosome;protein binding; Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family (556 aa)
     
   
  0.501
AT2G31610
Ribosomal protein S3 family protein; Its function is described as structural constituent of ribosome; Involved in response to salt stress, translation, response to abiotic stimulus; Located in 6 components; Expressed in root, cultured cell, leaf; Contains the following InterPro domains- K Homology, prokaryotic type (InterPro-IPR009019), K Homology, type 2 (InterPro-IPR004044), K Homology (InterPro-IPR004087), Ribosomal protein S3, C-terminal (InterPro-IPR001351), Ribosomal protein S3, eukaryotic/archaeal (InterPro-IPR005703); BEST Arabidopsis thaliana protein match is- Ribosomal protei [...] (250 aa)
     
   
  0.500
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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