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AT1G21790 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G21790" - TRAM, LAG1 and CLN8 in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G21790TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in integral to membrane; Expressed in 23 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- TRAM/LAG1/CLN8 homology domain (InterPro-IPR006634); Has 174 Blast hits to 174 proteins in 42 species- Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 6 (source- NCBI BLink) (288 aa)    
Predicted Functional Partners:
PORC
Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent (401 aa)
       
      0.762
NAC089
NAC domain containing protein 89; Transcription factor involved in plant cell division (340 aa)
       
      0.762
VAP27-1
Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2 (256 aa)
       
      0.762
AT1G27300
Uncharacterized protein At1g27300; Unknown protein; Has 54 Blast hits to 54 proteins in 19 species- Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source- NCBI BLink) (200 aa)
       
      0.762
EIN2
NRAMP metal ion transporter family protein; Central factor in signaling pathways regulated by ethylene (ET), and involved in various processes including development, plant defense, senescence, nucleotide sugar flux, and tropisms. Necessary for ethylene-mediated gene regulation, and for the induction of some genes by ozone. Acts downstream of ET receptors, and upstream of ethylene regulated transcription factors. Required for cytokinin-mediated processes. Seems to be implicated in cross-talk between ET, jasmonate and other pathways. Probably not involved in iron uptake. Has a short half [...] (1294 aa)
           
  0.711
IWS2
Transcription elongation factor (TFIIS) family protein; Transcription factor involved in RNA polymerase II (RNAPII) transcription regulation. Involved in transcription elongation. May function at post-recruitment and elongation steps of transcription; Belongs to the IWS1 family (406 aa)
           
  0.412
IWS1
Transcription elongation factor (TFIIS) family protein; Transcription factor involved in RNA polymerase II (RNAPII) transcription regulation. Involved in transcription elongation. May function at post-recruitment and elongation steps of transcription. May be recruited by BZR2/BES1 to target genes and promote their expression during transcription elongation process. Required for brassinosteroid (BR)-induced gene expression. Required the for regulation of numerous nitrogen-responsive genes in roots. Acts in roots to repress NRT2.1 transcription in response to high nitrogen supply. This r [...] (502 aa)
           
  0.412
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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