STRINGSTRING
AT1G22250 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G22250" - Uncharacterized protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G22250Uncharacterized protein (200 aa)    
Predicted Functional Partners:
SNL5
SIN3-like 5; Acts as a transcriptional repressor. Plays roles in regulating gene expression and genome stability (By similarity) (1167 aa)
           
  0.807
ORTHL
ORTHRUS-like; E3 ubiquitin-protein ligase. May participate in methylation-dependent transcriptional regulation. Mediates ubiquitination with the E2 ubiquitin-conjugating enzyme UBC11 (465 aa)
           
  0.780
NF-YC12
Nuclear factor Y, subunit C12; Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (195 aa)
           
  0.738
AT5G22470
NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferase; Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks (By similarity) (814 aa)
           
  0.670
FXG1
Alpha-fucosidase 1; Hydrolyzes alpha-1,2-linked fucose. Also active on fucosylated xyloglucan oligosaccharides (372 aa)
           
  0.634
SDG20
SET domain protein 20; Histone methyltransferase (354 aa)
           
  0.609
VIM5
VARIANT IN METHYLATION 5; E3 ubiquitin-protein ligase. May participate in CpG methylation-dependent transcriptional regulation (By similarity) (660 aa)
           
  0.606
VIM2
VARIANT IN METHYLATION 2; E3 ubiquitin-protein ligase. Participates in CpG methylation-dependent transcriptional regulation and epigenetic transcriptional silencing. Mediates ubiquitination with the E2 ubiquitin-conjugating enzyme UBC11 (623 aa)
           
  0.601
MYB115
Myb domain protein 115 (359 aa)
           
  0.600
VIM3
VARIANT IN METHYLATION 3; E3 ubiquitin-protein ligase. Participates in CpG methylation-dependent transcriptional regulation and epigenetic transcriptional silencing. Mediates ubiquitination with the E2 ubiquitin-conjugating enzymes UBC11, UBC8 and UBC8 homologs (e.g. UBC10, UBC11, UBC28 and UBC29) but not with UBC27, UBC30, UBC32, UBC34 and UBC36. Promotes methylation-mediated gene silencing leading, for example, to early flowering. Can bind to CpG, CpNpG, and CpNpN DNA motifs, with a strong preference for methylated forms, and with highest affinity for CpG substrate (617 aa)
           
  0.558
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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