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AT1G22420 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G22420" - Hydroxyproline-rich glycoprotein family protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G22420Hydroxyproline-rich glycoprotein family protein (480 aa)    
Predicted Functional Partners:
AT5G40680
Kelch repeat-containing protein (415 aa)
     
        0.438
LBD35
LOB domain-containing protein 35 (206 aa)
     
        0.438
AT4G33830
Glycosyl hydrolase family 10 protein (576 aa)
     
        0.438
AT4G32380
Pectin lyase-like superfamily protein (354 aa)
     
        0.438
AT4G15050
Uncharacterized protein (396 aa)
     
        0.438
AT3G50720
Putative protein kinase (377 aa)
     
        0.438
AT3G09990
Nucleoside transporter family protein; May be involved in nucleoside transport (417 aa)
     
        0.438
AT2G19220
Uncharacterized protein (439 aa)
     
        0.438
CLE8
CLAVATA3/ESR-RELATED 8; Extracellular signal peptide that regulates cell fate (PubMed-16407446). Represses root apical meristem maintenance (PubMed-16902140). Positively regulates the expression of the transcription factor WOX8 and thus, regulates early embryo development (PubMed-22427333) (86 aa)
     
        0.438
AGL49
AGAMOUS-like 49; Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (284 aa)
     
        0.438
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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